PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 366aa MW: 41311.9 Da PI: 5.2378 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.1 | 7.8e-35 | 52 | 142 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ +++++sw +nsfvv+d++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++i+ Aco008819.1 52 FLMKTYDMVDDPCTDQIVSWGVAKNSFVVWDPHAFATTLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFVRGQRQLLKNIR 139 9********************999*****************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Aco008819.1 140 RRK 142 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.1E-60 | 48 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-38 | 48 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-34 | 48 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.6E-32 | 52 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 52 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 91 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 103 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MNPYLNPVKE EYPGALAGVA VGASSSLLGS ENGLPLLPRP MQGLGDAGPP PFLMKTYDMV 60 DDPCTDQIVS WGVAKNSFVV WDPHAFATTL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW 120 EFANEGFVRG QRQLLKNIRR RKPPPPHPVP QQQPLGPYLE VGQFGYEAEI DRLKRDKQLL 180 MAELVKLRQE QQNTKALLRA MEERLQGTEQ KQQQMMVFLA RALRNPNFLQ QLATQNEKRK 240 QLEEAISKKR RRQIEQASFR GDAGSGSRVE IQTPIKLEAE TLERNILLDG VLDLETLALE 300 MQGLGKRKDK EHIDGELNDE FWEELLNGGI GEENGEVDIE GMSDSAEDVD VLAEKLGFLS 360 STSPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-26 | 43 | 141 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-26 | 43 | 141 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-26 | 43 | 141 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 251 | KRKQLEEAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020096365.1 | 0.0 | heat stress transcription factor A-2b-like | ||||
Swissprot | Q6VBB2 | 1e-148 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | A0A199VHL9 | 1e-179 | A0A199VHL9_ANACO; Heat stress transcription factor A-2b (Fragment) | ||||
STRING | XP_008813499.1 | 1e-162 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-104 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Aco008819.1 |
Publications ? help Back to Top | |||
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