PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco008746.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YA

Protein Properties

Length: 318aa MW: 34711.1 Da PI: 9.9433

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco008746.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.8	5e-30	154	210	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQ+++Il+RR +Rak+++e+kl +k rkpylh+SRh hA+rR+RgsgGrF Aco008746.1 154 DEPIYVNAKQFHGILRRRRARAKAARENKL-IKVRKPYLHKSRHLHAMRRARGSGGRF 210 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.8E-34	152	213	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.309	153	213	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.9E-27	155	210	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.8E-22	156	178	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.8E-22	187	210	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSFKVHEGVG QVSFNLQNNG NPIPWWIGTQ PLHGASFGQF KSLNEKNTMG EEGYLGPAIP 60 VKVTGDATEF SLSQGFVSGS INTEKKGAKF SQPLENLTLQ SPLPEYVGHF DSGLGHSTVY 120 SSFSYADQCC GLYTSYGTQA MNGRMLLPLS MTADEPIYVN AKQFHGILRR RRARAKAARE 180 NKLIKVRKPY LHKSRHLHAM RRARGSGGRF LNTKKLNGEP NPGGADRKAK IGPATSPSSE 240 VLQSDSLNRS SGSSISGSEV SSLSLYAREE VDQFNFIEHL PPSILHPTEN KLNRDNNNII 300 TNKWAAAADN CCSLLKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-18	154	217	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020096704.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X1
Refseq	XP_020096705.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBL	A0A2I0WD14	3e-91	A0A2I0WD14_9ASPA; Nuclear transcription factor Y subunit A-10
STRING	XP_008811292.1	1e-88	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	4e-32	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Aco008746.1