PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008700.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 854aa    MW: 93785.4 Da    PI: 6.2664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-192077457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aco008700.1 20 YVRYTPEQVEALERVYNECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                 6789****************************************************97 PP
2START159.33e-501693752203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g+++l +++ s+++sg a+r++g+v  +++  v+e+++d++ W ++++  ++l vi +g  g ++l++++
  Aco008700.1 169 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSLGIVAVSHNSSGVAARVCGLVSLEPT-KVAEIIKDRPSWYRDCRCLDVLSVIPTGngGNIELIYMQ 265
                  68999*****************************************************.7777777777***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+  Rdf+++Ry+  l++g++vi+++S+++++  p+    +++vRa ++pSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  + 
  Aco008700.1 266 TYAPTTLAVaRDFWTLRYTTGLEDGSLVICERSLTPTTGGPTgppPQNFVRADMFPSGCLIRPCDGGGSMIHIVDHVDLEAWSVPEVLRPLYESPKIL 363
                  *****99988****************************9999888899************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++k+++ +l++ 
  Aco008700.1 364 AQKMTLGALRHI 375
                  ****99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5971478IPR001356Homeobox domain
SMARTSM003895.9E-161682IPR001356Homeobox domain
SuperFamilySSF466895.13E-171981IPR009057Homeodomain-like
CDDcd000863.72E-171979No hitNo description
PfamPF000462.0E-162077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-182177IPR009057Homeodomain-like
CDDcd146861.81E-671110No hitNo description
PROSITE profilePS5084825.339159387IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-21167351IPR023393START-like domain
SMARTSM002348.3E-43168378IPR002913START domain
SuperFamilySSF559611.19E-37169380No hitNo description
PfamPF018526.0E-48169376IPR002913START domain
PfamPF086701.6E-46697852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MAMAMGVAGK EKAGMDAGKY VRYTPEQVEA LERVYNECPK PSSMRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYENGYMH  120
QQIHTASVAN TDTSCESVVT SGQHHHQQCN PTSQHPPRDA NDPAGLLAIA EETLAEFLSK  180
ATGTAVDWVQ MVGMKPGPDS LGIVAVSHNS SGVAARVCGL VSLEPTKVAE IIKDRPSWYR  240
DCRCLDVLSV IPTGNGGNIE LIYMQTYAPT TLAVARDFWT LRYTTGLEDG SLVICERSLT  300
PTTGGPTGPP PQNFVRADMF PSGCLIRPCD GGGSMIHIVD HVDLEAWSVP EVLRPLYESP  360
KILAQKMTLG ALRHIRQIAQ ESSGEVSYVG GRQPAVLRTF SHRLCRGFND AVNGFTEDGW  420
SLMSNDGVDD VAIAINSSPN KLLGSSAFFC AVGGVLCVKA SMLLQNVPPA LLVRFLREHR  480
SEWADCGVDA YSAASLRASP FAVPGLRAYN GFMGSQVILP LAHTLEHEEF LEVIRLEGPG  540
FNQDEIMPRD MYLLQLCSGV DEIGACAQLV FAPIDESFAD DVPLLASGFR VIPLDAKTDG  600
PGTTRTLDLA STLEVGSGVG SRPKSNPSNS YNQRSVLTIA FQFMYENHLR ENVATMARQY  660
VRSVMASIQR VAMAIAPSRL GPQIGAKNLP GSPEAHTLAR WISRSYRFHT GVELFPADSP  720
EDDSLLKLLW HHSDAIMCCS LKASVYCSLL FLVTNASPVF TFTNQAGLDM LETTLVALQD  780
IRLEKILDDG GRKVLCSEFD KIMQQGFAYL PAGICMSSMG RPVSYEQAVA WKVLDEDDLP  840
HCLGLMFLNW SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096610.10.0homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A199W7C30.0A0A199W7C3_ANACO; Homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]