PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LSD | ||||||||
Protein Properties | Length: 172aa MW: 18081 Da PI: 8.5471 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.1 | 6.1e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA+sV+CalC t+ Aco008687.1 7 CNGCRSMLLYPRGATSVCCALCRTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 43.3 | 6e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+YP GA VRC++C+ + Aco008687.1 46 CGGCRTLLMYPHGAATVRCSCCNMI 70 **********************975 PP | |||||||
3 | zf-LSD1 | 45.5 | 1.2e-14 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Crt+L+YP+GApsV+Ca+C+ V Aco008687.1 84 CAQCRTTLMYPYGAPSVKCAVCHYV 108 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.1E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.2E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.1E-14 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-11 | 81 | 109 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.5E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQSQVVCNGC RSMLLYPRGA TSVCCALCRT ITSVPPPGVE TAHLICGGCR TLLMYPHGAA 60 TVRCSCCNMI NNVRSANSVA HVNCAQCRTT LMYPYGAPSV KCAVCHYVTN TGMTNMMAPA 120 SVPQRPNEYP STSAPPSQGN NVTVVVENPK SVDERGNLVN NVVVGVTVGK K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020095313.1 | 1e-120 | protein LOL3-like | ||||
Swissprot | Q6ASS2 | 4e-74 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A199V4M5 | 1e-118 | A0A199V4M5_ANACO; Protein LOL3 | ||||
STRING | XP_008776040.1 | 3e-83 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-49 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco008687.1 |
Publications ? help Back to Top | |||
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