PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008686.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 465aa    MW: 51004.7 Da    PI: 6.6554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008686.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543e-17292338455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Aco008686.1 292 VHNLSERRRRDRINEKMRALQELIPHC-----NKSDKASILDEAIEYLKSLQ 338
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-21286350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-21286345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.324288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-17291342No hitNo description
PfamPF000101.7E-14292338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-18294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEWNKYQMNQ FVPNWNMDDE SRSLRDLVAA PDRKEPIGAD NELIELLWQN GHVVMQSQTH  60
RKPPALAPEF KQLRKHDEPM LKSAATVAAT SSLTRDETAS WFQYPLEDSI DRDFYSEFFF  120
DMPNADEGRP GAENDAVDFS HFAKQWKGGD AGASNPLPGE KRVESGGLGV AGASSSSMMT  180
VASSICVSNQ IQVAAKLRQI ASGDAGASAS RRSSKEEAHT RLASQEAAVA SSSGRSGCSF  240
GFGRTEQHNN KRKERGMEEF ESLSEDAENE SVEANNQAQR STSTRRSRAA EVHNLSERRR  300
RDRINEKMRA LQELIPHCNK SDKASILDEA IEYLKSLQLQ VQFLWMGTGM GPMMFRGFHQ  360
YMSRVGPASI PSLHSPVPMS RAPFMNNQFM ASTSTANAAN FSNQMPNVPL GAGLLGLNHL  420
PLQSQAMNCD AYGPKTAQQH QSSVEPISGA SPSESTPKDK AGKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296301ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6637949e-66KM663794.1 Ananas bracteatus clone 48384 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095267.10.0transcription factor PIF4-like isoform X1
RefseqXP_020095268.10.0transcription factor PIF4-like isoform X1
TrEMBLA0A2H3X0R61e-110A0A2H3X0R6_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
STRINGXP_008776592.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-29phytochrome interacting factor 3