PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 818aa MW: 91906.1 Da PI: 8.3302 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 1e-14 | 453 | 496 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd l av+ +G ++W ++a++m Rt+ qc +rw+k l Aco008682.1 453 WTEEEDITLCAAVETFGDNNWQAVASHMD-SRTGPQCSNRWRKTL 496 *****************************.************975 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 504 | 548 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ av ++G ++W++Ia+ + gRt qc++rw++ Aco008682.1 504 GRWSVDEDKRLKVAVMLFGAKNWNKIAQFAP-GRTQVQCRERWLNC 548 8******************************.***********996 PP | |||||||
3 | Myb_DNA-binding | 49.9 | 7.1e-16 | 556 | 600 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT+eEd +l++a++++G W++Ia++++ Rt+ qc+ rw +l Aco008682.1 556 QAWTAEEDSKLLEAINEHGYC-WSRIAACIP-PRTDSQCRRRWKVLL 600 68*****************99.*********.9**********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.121 | 295 | 389 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.044 | 299 | 393 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-10 | 301 | 318 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-10 | 363 | 404 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.61E-11 | 389 | 447 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.095 | 392 | 444 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0026 | 396 | 446 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 405 | 450 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-20 | 429 | 499 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.164 | 445 | 500 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-13 | 449 | 498 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-16 | 451 | 498 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-12 | 452 | 495 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-11 | 453 | 496 | No hit | No description |
SuperFamily | SSF46689 | 9.9E-29 | 500 | 596 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.108 | 501 | 549 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 502 | 551 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-18 | 504 | 552 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-15 | 504 | 548 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.47E-12 | 505 | 547 | No hit | No description |
PROSITE profile | PS51294 | 22.623 | 550 | 604 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 553 | 600 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 554 | 602 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 556 | 600 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-13 | 557 | 600 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MASYASSDSD RDDALDEDME ALRRACMLTG ADPADALGGS DSDSGGESSD SDDLGLLRRL 60 QERFSVPSAA AGASESLPFV KPLSILPQSD SDEEDDFETL RAIQRRFSHY ESDALQRTSE 120 SFVQEADDSG LMSKQGTPDI FPKGGKRGVL SEEYSGSTAK VSHHGENKSL NFNARTLTHS 180 QFPKSAQALV DALKKNRSCQ KFIRRKLIEI EAKIEENKKL KDRVKCLMDF QVACKKTAGH 240 ILCQKKDPRV RLISNQKPSS RQPQKNTCRK LPVLYYGPEE NSQVSKYKLV QERFPVSLRK 300 QPWSNTEREK LAKGIKQQYQ EMLMCNLMNA DSNIEGLHGS DMMPALCSSD LEVPPEKIRS 360 FLPSVNWDRL ATLYLPDRSG EECEARWLNC EDPLINHNPW TMMEDKKLLF IVQEGGVYNW 420 INISISLGTH RTPFQCLARY QRSLNPHILN RDWTEEEDIT LCAAVETFGD NNWQAVASHM 480 DSRTGPQCSN RWRKTLNPDR RKVGRWSVDE DKRLKVAVML FGAKNWNKIA QFAPGRTQVQ 540 CRERWLNCLD PSLNLQAWTA EEDSKLLEAI NEHGYCWSRI AACIPPRTDS QCRRRWKVLL 600 PHEVPLLQAA RQMKRTVLIS NFVDRESERP TIGPNDFTTV ISSKSGETVE KTSSDQTKKM 660 RTKSKRCRKE NSAADGLMES SAGTAEDVRV ERSTKRSSSS SRQRKSRDKS RKTDEENLTT 720 DGIANPSGDN VPANMPGLHG VNSCTAEKMG IKQKRETSSN SRKKSRNESG KSPGDNFTPR 780 SMVNTSANVD SSGLLLYSNG NSHTDENGNT TGVECQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-29 | 366 | 596 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-29 | 366 | 596 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 657 | 663 | KKMRTKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020096492.1 | 0.0 | snRNA-activating protein complex subunit 4 isoform X2 | ||||
TrEMBL | A0A199V3Y9 | 0.0 | A0A199V3Y9_ANACO; Myb-like protein L | ||||
STRING | XP_008793540.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-167 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Aco008682.1 |