PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 229aa MW: 24657.9 Da PI: 7.5115 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.5 | 6.3e-22 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien+ r+v fskRr+g++ KA+ELS+LC+aevavi+fs++g+ y + Aco008623.1 17 KMIENEQARHVCFSKRRAGVFTKASELSTLCGAEVAVIVFSPSGNPYSF 65 68******************************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.343 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-31 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-27 | 10 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.97E-32 | 10 | 78 | No hit | No description |
PRINTS | PR00404 | 1.7E-18 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-25 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-18 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-18 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MERKGKGSRG RKKIEMKMIE NEQARHVCFS KRRAGVFTKA SELSTLCGAE VAVIVFSPSG 60 NPYSFGSPAV DPVLDRFLSG GLDRNNVGSD NEEIQKLNQE YMELAKQIEA EKARKERIDE 120 RLRLASQSQE VKWLENIDKL GLDELNQLRD GLLRVKAQVN ERARELLGIH GPPLENLGLG 180 LDLGLGLGLG LGHGMDVGGP SSSSGATERA YPVKAENPSG SGSSSGSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 2e-15 | 11 | 76 | 18 | 83 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 2e-15 | 11 | 76 | 18 | 83 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020095945.1 | 1e-164 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A199VA89 | 1e-161 | A0A199VA89_ANACO; Agamous-like MADS-box protein AGL29 | ||||
STRING | GSMUA_Achr5P01940_001 | 5e-63 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-33 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Aco008623.1 |