PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008597.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 682aa    MW: 74613.8 Da    PI: 6.9834
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008597.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-12336392155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Aco008597.1 336 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 392
                  78*******************77776664346655.77******************98 PP
2AP248.42.3e-15435486155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Aco008597.1 435 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 486
                  57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-9336392IPR001471AP2/ERF domain
CDDcd000185.75E-19336400No hitNo description
SuperFamilySSF541712.68E-14336401IPR016177DNA-binding domain
PROSITE profilePS5103217.359337400IPR001471AP2/ERF domain
SMARTSM003808.3E-23337406IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12337401IPR001471AP2/ERF domain
PRINTSPR003671.8E-6338349IPR001471AP2/ERF domain
PfamPF008475.9E-10435486IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18435496IPR016177DNA-binding domain
CDDcd000184.97E-26435496No hitNo description
SMARTSM003803.0E-35436500IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-18436494IPR001471AP2/ERF domain
PROSITE profilePS5103219.058436494IPR001471AP2/ERF domain
PRINTSPR003671.8E-6476496IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKSMSNNNTN NNNNNNNNNS NNSSSSNNNW LGFSLSPHMT MEVSGGSAHH HQQQPSNDQG  60
HHHHHHPQHI TASASASASA VSGVFFPPTH FCYGVGDNGG YYSQLSSMPL KSDGSLCIME  120
ALSRSEQGMV PSPSPKLEDF LGSGPNMGTH HDHYGNNNHN HNNNNNNNSS SSNDRGSTMA  180
LSLDSMYYHQ NPVHDTTQTH PLHLQQHPFF QPLQEGVCSV LGGHDMYHAS LVEDPMVGDS  240
NWVPRSYNGG SSGINDEGSM TTGALGAVAY GELHPLSLSM SSGSQSSCVT APLHVTPPTP  300
TDYMNLDASK RRGGGKGGQK QPVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK  360
KEGQTRKGRQ GGYDMEEKAA RAYDLAALKY WGPSTHINFP LEDYQEELEE MKNMTRQEYV  420
AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVSGNK DLYLGTFSTQ EEAAEAYDIA  480
AIKFRGTNAV TNFDISRYDV EKIMASSTLL SGESARRNKS IEAQKCGKDN HLPLLDDNSS  540
SGSEWKMTVF QGNNQTPTPR SEEHTNQESL EASGEFRNET FSVLQGLVGI DAMSSAAQVG  600
DNAESRANPH LVNESPPMAS IGLGNSREES PDRGGLAMFF AKPTAKIMSP TPLSSWMPST  660
QIRPSSVAMA QMPLFAAWTD A*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6653811e-149KM665381.1 Ananas bracteatus clone 50511 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095431.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-154CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A199VUY20.0A0A199VUY2_ANACO; AP2-like ethylene-responsive transcription factor ANT
STRINGXP_008784660.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-120AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]