PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008460.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 785aa    MW: 85843.2 Da    PI: 6.6625
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-20110166157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k+
  Aco008460.1 110 KKRYHRHTQHQIQELESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQLKR 166
                  688999***********************************************9997 PP
2START182.81.9e-5731548643206
                  SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEE CS
        START  43 dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvS 129
                   ++ea+r+++vv+m++ +lve+l+d++ qW + +     +a+tlev+s+g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS
  Aco008460.1 315 LKSEASRETAVVIMNHINLVEILMDVN-QWRTIFSsivsRATTLEVLSTGvagnynGALQVMSAEFQVPSPLVPtRESLFVRYCKQHADGTWAVVDVS 411
                  479************************.********************************************************************** PP

                  EE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE.--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 130 vdseqkppesssvvRaellpSgiliepksnghskvtwvehvd.lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  +ds + ++   +   ++++pSg+li++++ng+skv+wvehvd +++r++h+++++lv+sgla+gak+wv tl+rqce+
  Aco008460.1 412 LDSLRANS---PATLCRRRPSGCLIQEMPNGYSKVIWVEHVDqVDDRSVHNIYKPLVNSGLAFGAKRWVTTLDRQCER 486
                  ******98...3555679***********************97899******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-19100167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-21103168IPR009057Homeodomain-like
PROSITE profilePS5007117.572107167IPR001356Homeobox domain
SMARTSM003893.0E-20108171IPR001356Homeobox domain
CDDcd000864.94E-20110168No hitNo description
PfamPF000464.7E-18110166IPR001356Homeobox domain
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
SMARTSM002349.4E-46263486IPR002913START domain
CDDcd088751.07E-98307485No hitNo description
PfamPF018526.4E-48316486IPR002913START domain
SuperFamilySSF559613.16E-29317488No hitNo description
PROSITE profilePS5084833.302318489IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-6332484IPR023393START-like domain
SuperFamilySSF559615.36E-23507738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MPGGIIMNPM RHVPTSMIGR NAGALYGSSS PLSLGQIASP NMLEGQQLPV LQHQHHHLME  60
IPQLQAVTAE SESVQPALEE EFESNKSGSE NVEVEDAFAD DQDPNQRPKK KRYHRHTQHQ  120
IQELESFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQLKRIEGA FNIVTLRGGR  180
ATAVPYHPRR GAAPRAVVEA QQERQENGHL RADNEKLRAE NMRYKEALGN ASCPNCGGPA  240
SLGEMSFDEH HLRIENARLR EEIDRISAIA AKYVGKPIAS YPLIPDSFSL HSPLESFTDH  300
HHQMLGGIGP KPFDLKSEAS RETAVVIMNH INLVEILMDV NQWRTIFSSI VSRATTLEVL  360
STGVAGNYNG ALQVMSAEFQ VPSPLVPTRE SLFVRYCKQH ADGTWAVVDV SLDSLRANSP  420
ATLCRRRPSG CLIQEMPNGY SKVIWVEHVD QVDDRSVHNI YKPLVNSGLA FGAKRWVTTL  480
DRQCERLASV MASNIPSGDI GVITSAEGRK SMLKLAERMV ISFCGAVTAS TTHQWTTLSG  540
SGAEDVRVMT RKSVDDPGRP PGIVLNAATS FWLPVSPKRV FDFLRDESSR SVWDILSNGG  600
VVQEMAHIAN GRDHGNCVSL LRVNSVNSNQ SNMLILQESC TDPTGSYVIY APVDVVAMNV  660
VLNGGDPDCV ALLPSGFAIL PDGPSAVPGG TTVEVGSSGS LLTVAFQILV DSVPTAKLSL  720
GSVATVNSLI ACTVERIKAA ELGNDLDHKS GESRTHLRLS LPCGVGYALF SNFKVTEETT  780
YVHS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109359.10.0homeobox-leucine zipper protein ROC2-like
RefseqXP_020109360.10.0homeobox-leucine zipper protein ROC2-like
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLM0RVG20.0M0RVG2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P25820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2