PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27535.3 Da PI: 7.7216 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.4e-26 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+EL vLCda+v v+ifss+gk++e++s Aco008359.1 11 KRIENPTSRQVTFSKRRGGLLKKANELAVLCDAQVGVVIFSSSGKMFEFCS 61 79***********************************************96 PP | |||||||
2 | K-box | 86.6 | 5.1e-29 | 78 | 174 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ e ++++ e++++k+e+++Lq + R++ GedL+sL++++L+qLeqqLe ++ k+R++K++ll++q+++l++ke+ l+++n+ L++++ e Aco008359.1 78 TSTRfEEIDNQQHIFCEITRMKSENDKLQASMRQYTGEDLTSLTMNDLNQLEQQLEFAVDKVRARKHQLLTQQLDNLRRKEHILEDQNNHLSRMISE 174 5555566778999999****************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-41 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.763 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-32 | 4 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.54E-43 | 4 | 75 | No hit | No description |
PRINTS | PR00404 | 1.2E-28 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-26 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.253 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPMGRGKIEI KRIENPTSRQ VTFSKRRGGL LKKANELAVL CDAQVGVVIF SSSGKMFEFC 60 SPPALSMRHL IDRYQRVTST RFEEIDNQQH IFCEITRMKS ENDKLQASMR QYTGEDLTSL 120 TMNDLNQLEQ QLEFAVDKVR ARKHQLLTQQ LDNLRRKEHI LEDQNNHLSR MISENQAVEH 180 AAMDQKVGDM AMLDHFGHFY GDDASRTLLQ LSPQLHAFRL QPTQPNLQDP SLHGYGLQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 3e-17 | 3 | 62 | 1 | 60 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020109779.1 | 1e-179 | MADS-box protein AeAP3-2-like isoform X1 | ||||
Swissprot | Q6H711 | 1e-105 | MAD29_ORYSJ; MADS-box transcription factor 29 | ||||
TrEMBL | A0A2H3Z3T1 | 1e-132 | A0A2H3Z3T1_PHODC; MADS-box protein AeAP3-2-like | ||||
STRING | XP_008807981.1 | 1e-132 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-53 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco008359.1 |