PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008315.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 357aa    MW: 39377.1 Da    PI: 8.37
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008315.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.5e-15104172270
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                  Wt +e+laL++ +  ++e+ +++ +  ++W+ vs+ ++e g+ r ++qCk +we++  +y++i+++e +
  Aco008315.1 104 WTTHETLALVNEVAALDEAWSKSLSSYQKWKIVSDSCAESGVVRASNQCKRRWESILLEYRRIRRWECR 172
                  ******************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-11102204No hitNo description
PROSITE profilePS500907.271103160IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.8E-4103160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
KKEPHKKKKK KKKLIEIQGE KKEKKKNHRA TRSRKIHQVI LNSKAMQQHQ QQSDPLCVVQ  60
ALEATTKKKT TTTTKTKGET LASPSHGPGG SSSRCTRSQA APNWTTHETL ALVNEVAALD  120
EAWSKSLSSY QKWKIVSDSC AESGVVRASN QCKRRWESIL LEYRRIRRWE CRNGVGSYWG  180
LDGGRRKGLG LPVSFDREVF DSMDAVIKVD EAHPGPGNSD SEELIGNAGG SEAPVAAADA  240
VDAEMADAGT DADEDLDSDN ETNVKPQSNP EKAQELAIML QENAQHIHSI LKRELTENPS  300
PDRPRADLPR PNSAEVEFVR RQADELIKTF GGLVSNLNQF CDLIKDGGYD GIISMN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6639882e-81KM663988.1 Ananas bracteatus clone 48686 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109233.10.0trihelix transcription factor ASR3 isoform X1
RefseqXP_020109234.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLA0A199UXX20.0A0A199UXX2_ANACO; Trihelix transcription factor ASR3
STRINGXP_008781712.12e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.18e-26sequence-specific DNA binding transcription factors