PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ZF-HD | ||||||||
Protein Properties | Length: 252aa MW: 28100.7 Da PI: 6.57 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.5e-32 | 66 | 121 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAas+Gg+a+DGCgEfmp+ g+egt++al+C+AC CHRnFHR+ev Aco008004.1 66 VVRYRECLKNHAASIGGTALDGCGEFMPN-GAEGTIEALQCSACSCHRNFHRKEVMG 121 589*************************8.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-20 | 66 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.0E-29 | 67 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-30 | 68 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.628 | 69 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.89E-18 | 172 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-29 | 173 | 243 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.9E-26 | 182 | 238 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDLSNHEGGN TNNNPTMSSS YVGHVIGHQH QGPQPISTLN PEEEEEEEEG EGEGEEEEEE 60 EKVVVVVRYR ECLKNHAASI GGTALDGCGE FMPNGAEGTI EALQCSACSC HRNFHRKEVM 120 GQMGQMGLLG QAAFGPAGPY RFIIPRGCSP AAHHHMVMPL GAMHASEYNE EVERRSPAML 180 RKKRFRTKFS QDQKEKMMGF AERVGWRIQR VEESVVQQFC QEVGVKRRVL KVWMHNNKHS 240 LAKKGSLQLQ S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 183 | 240 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020111280.1 | 0.0 | zinc-finger homeodomain protein 3-like | ||||
Swissprot | Q9M9S0 | 1e-63 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A199UK15 | 1e-149 | A0A199UK15_ANACO; Zinc-finger homeodomain protein 4 | ||||
STRING | XP_008808961.1 | 3e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 1e-64 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Aco008004.1 |