PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007999.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 26894.7 Da PI: 9.9592

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007999.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.4e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Aco007999.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP
2	K-box	104.2	1.7e-34	78	172	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 sg e + ++++ qe+akL+ +i+ Lq+ +Rhl+G++L+sL++keL+qLe++Le+++++iRskK+ell+++ie++qk+e elq++n+ Lr+k+ Aco007999.1 78 SGPVIEVNSQQYYLQEAAKLRHQIQILQNANRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHELLFAEIEHMQKRELELQHDNMHLRAKVV 172 3333778889**********************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	34.09	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-42	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.14E-46	2	76	No hit	No description
SuperFamily	SSF55455	3.01E-34	2	84	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.4E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-33	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.3E-27	83	171	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.398	87	177	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60 STKSIIERYK KASDKSNSGP VIEVNSQQYY LQEAAKLRHQ IQILQNANRH LMGDSLSSLT 120 VKELKQLENR LERGITRIRS KKHELLFAEI EHMQKRELEL QHDNMHLRAK VVENQRAQES 180 GMQQPANEFD ALAPVDLNAF YRVGILETAP NVLERRDRTA LQLRCESKPD STA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
1tqe_R	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
1tqe_S	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_A	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_B	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_C	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_D	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_E	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_F	2e-21	1	78	1	78	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in seed development. {ECO:0000269\|PubMed:29853599}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111347.1	1e-172	MADS-box transcription factor 21-like
Refseq	XP_020111348.1	1e-172	MADS-box transcription factor 21-like
Swissprot	A0A217EJJ0	1e-102	AG11S_VITVI; Agamous-like MADS-box protein AGL11
TrEMBL	A0A199VR78	1e-127	A0A199VR78_ANACO; MADS-box transcription factor 3 (Fragment)
STRING	XP_008781978.1	1e-126	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP649	37	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-94	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Aco007999.1

Publications ? help Back to Top
Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751] Malabarba J, et al. The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine. J. Exp. Bot., 2017. 68(7): p. 1493-1506 [PMID:28369525] Royo C, et al. The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11. Plant Physiol., 2018. 177(3): p. 1234-1253 [PMID:29853599]