PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20772.8 Da PI: 5.8619 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.8 | 8.9e-26 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCdae+ vi+fs +gklye + Aco007995.1 10 RIENPVHRQVTFCKRRGGLLKKANELSVLCDAEIGVIMFSANGKLYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 24.3 | 1.3e-09 | 80 | 163 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +s e ++++ +qe+ Lk+ei+ Lq+ +R + G++ +++ eLq +e++Le +++ ++i+ l++ke l+ +n+ L++k+ Aco007995.1 80 ESSEVNQSQVAEQEVFMLKQEIDLLQKGLRYIYGDGTaAHMTFDELQAVERNLE----------IQIMAQEIQMLRNKEGILKTANQILQTKII 163 44667788999************************87258*************9..........589***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.03E-29 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.843 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.94E-37 | 2 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-11 | 81 | 162 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRGGLLK KANELSVLCD AEIGVIMFSA NGKLYELATN 60 GNMQNLIERY KRIGVEGQAE SSEVNQSQVA EQEVFMLKQE IDLLQKGLRY IYGDGTAAHM 120 TFDELQAVER NLEIQIMAQE IQMLRNKEGI LKTANQILQT KIIEQNGLFD NVAVDDSNIS 180 RDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
6byy_B | 8e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
6byy_C | 8e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
6byy_D | 8e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
6bz1_A | 9e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
6bz1_B | 9e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
6bz1_C | 9e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
6bz1_D | 9e-16 | 1 | 89 | 1 | 80 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020111604.1 | 1e-118 | MADS-box transcription factor 26-like isoform X2 | ||||
Swissprot | Q2QW55 | 4e-74 | MAD33_ORYSJ; MADS-box transcription factor 33 | ||||
TrEMBL | A0A199VRK0 | 8e-94 | A0A199VRK0_ANACO; MADS-box transcription factor 33 | ||||
STRING | XP_008782100.1 | 5e-80 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 5e-57 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Aco007995.1 |