PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007763.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 704aa    MW: 76760.5 Da    PI: 7.0204
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007763.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.21.9e-17224312186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  +  L++a++e+ e+l+rg+l++ +We+v+  +      ++  +s +qCk+k++nl+kryk + ++ +++   ++s++p+f+++e
  Aco007763.1 224 EWSDTAIDSLLDAYTERFEQLNRGNLRGRDWEDVATIVsdrcDGQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLAVSHWPWFKKME 312
                  5********************************9888777557788899************************98.78889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-20222314No hitNo description
Gene3DG3DSA:3.40.1160.105.3E-73452696IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B34.052461697IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.83E-57461696IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.7E-23464676IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.59E-96464697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MASCDDDFAL LGDDAQSQPQ HQHQHQHQHQ QAAGAAVPFA HRYIAKAAAA AAAATLPLRS  60
RTHAALNAIA SPKKGAVGDE EEDYGEAFAQ ADASKCPAPS FHDVASHPQH HCFSADANPF  120
VHDGHDDDDD DDVAAAAAPS PANGGNNDGN PDRKPRASSS HQQHRPQQQH QHHPHPPSAP  180
RPDPKRRNPD DPSDGESPYC YGSGASKKTR PMSSSSDYRK DREEWSDTAI DSLLDAYTER  240
FEQLNRGNLR GRDWEDVATI VSDRCDGQKA GKSVEQCKNK IDNLKKRYKV ECQRLSSGGL  300
AVSHWPWFKK MEHIIGNSSS SSKAGPDDDK SLVPITSTST SRQQIKRFPK LLSHQRMKAR  360
DGEILKVWFY LSWHDTRHCQ HMPTVSTGTT FLDYSVSYEV EAKDLSAQWH GPYLVEAIGS  420
ECWSGITSEF SWCKGHSRYH GAASGPVNVP NNSKMNSLSN PRWKRVVLKI SGASLAGAAP  480
HNVDPKVIML ISREIQMANR LGVQVAVVVG GRNIFCGDSW VATAGIDRAT TYQISMMASV  540
MNAVLLQASL EKNGVETRVQ TALTMPEIAE PYVSRRAMRH LEKGRVVIFG GIGAGIGNPL  600
FTTDTAAALR ASEINADAIL KGTTGDGLYS CHPRNGNNVP FEHISYRELV SRGFTAMDMT  660
AITFCEENDI PVVLFNLLEP GNISRALCGD QVGTLVDQSG RIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A1e-624616965238uridylate kinase
1z9d_B1e-624616965238uridylate kinase
1z9d_C1e-624616965238uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111549.10.0uncharacterized protein LOC109726396 isoform X1
TrEMBLA0A199W1K10.0A0A199W1K1_ANACO; Uridylate kinase
STRINGGSMUA_Achr6P13420_0011e-142(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-105Trihelix family protein