PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 31987.1 Da PI: 6.2585 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.8e-52 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL kkv+++k+++ +++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratksgyWkatgkd+ev++ ++ Aco007742.1 10 LPPGFRFYPSDEELVCHYLYKKVANEKISEGTTMIEVDLHAKEPWELPEVAKLSANEWYFFSFRDRKYATGSRTNRATKSGYWKATGKDREVHDPsTR 107 79***************************9889***************88888999*************************************99677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg++ktLvfy+grap+g+k+ Wvmhe+rl Aco007742.1 108 TVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 138 78***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-60 | 8 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.973 | 10 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-28 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGLRDIESTL PPGFRFYPSD EELVCHYLYK KVANEKISEG TTMIEVDLHA KEPWELPEVA 60 KLSANEWYFF SFRDRKYATG SRTNRATKSG YWKATGKDRE VHDPSTRTVV GMRKTLVFYR 120 GRAPNGVKSG WVMHEFRLDT PHSPPKEDWV LCRVFHKRKG EGEQDHSVGS SCEHAMGSSP 180 PMVEDPMTMM MGHHEGGCRD MVSSSSHPLT NPHQEDHNSN SYMNLALLHY SLIDIPQDVM 240 MGLGPKGGDD ECGSMFDVGM DDDHNHNDHG MVGMGMGMGM GMGVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 1 | 164 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093492.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 7e-61 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A199UL37 | 0.0 | A0A199UL37_ANACO; Protein CUP-SHAPED COTYLEDON 1 | ||||
STRING | XP_008785238.1 | 1e-124 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 9e-84 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Aco007742.1 |