PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007733.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 233aa    MW: 26321.4 Da    PI: 6.1012
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007733.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G ++W++ ++  g+ R++k+c++rw +yl
      Aco007733.1 14 KGPWTPEEDQILISYIQKYGHDNWRALPKLAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.18.7e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++++lG++ W+tIa++++ gRt++++k+ w+++l
      Aco007733.1  67 RGNFTAEEEETIIRLHELLGNR-WSTIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.574961IPR017930Myb domain
SuperFamilySSF466896.24E-3210108IPR009057Homeodomain-like
SMARTSM007173.1E-151363IPR001005SANT/Myb domain
PfamPF002493.6E-171461IPR001005SANT/Myb domain
CDDcd001675.11E-121661No hitNo description
PROSITE profilePS5129426.12562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2765116IPR009057Homeodomain-like
SMARTSM007173.4E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1567112IPR001005SANT/Myb domain
CDDcd001674.33E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQILISYIQ KYGHDNWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TAEEEETIIR LHELLGNRWS TIAAKLPGRT DNEIKNVWHT HLKKRLGPEH  120
ANHEKRKVVQ STTPSVPQTN SDEEHQRFFG SPEQSFSGLS SSTATESSGG NFGAKEESFS  180
SEAVPEIDES FWSETISASE LFGTVDTLNY SDHTDFWLRV FLEAGEINDL PL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
1h8a_C5e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093513.11e-173myb-related protein Myb4-like
SwissprotQ7XBH44e-85MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A199UQX91e-168A0A199UQX9_ANACO; Myb-related protein Myb4
STRINGXP_008791593.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-79myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]