PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007722.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92784.9 Da    PI: 6.1249
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007722.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-182582457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  Aco007722.1 25 YVRYTPEQVEALERVYAECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCRDKQ 82
                 6789***************************************************996 PP
2START165.63.5e-521623672202
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+      g  g+++l +++
  Aco007722.1 162 IAEETLAEFLSKATGTAVDWVQLPGMKPGPDSVGIVAISHGCNGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYMQ 258
                  7899******************************************************9999999999.***********999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l++g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s v++v+h dl++++++++lr+l++s+++ 
  Aco007722.1 259 MYAPTTLAPaRDFWTLRYTTSLEDGSLVVCERSLSGSGGGPNaasAHQFVRAEMLPSGYLIRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVV 356
                  ************************************99999999999*************************************************** PP

                  HHHHHHHHTXX CS
        START 192 gaktwvatlqr 202
                  ++k+++a+l++
  Aco007722.1 357 AQKMTTAALRY 367
                  ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241983IPR001356Homeobox domain
SMARTSM003898.3E-162187IPR001356Homeobox domain
CDDcd000861.09E-162484No hitNo description
SuperFamilySSF466891.84E-162487IPR009057Homeodomain-like
PfamPF000461.2E-152582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-182682IPR009057Homeodomain-like
CDDcd146863.35E-676115No hitNo description
PROSITE profilePS5084826.196152371IPR002913START domain
CDDcd088753.61E-74156370No hitNo description
SuperFamilySSF559616.04E-37161370No hitNo description
SMARTSM002341.1E-40161371IPR002913START domain
PfamPF018525.7E-50162368IPR002913START domain
Gene3DG3DSA:3.30.530.204.1E-21162347IPR023393START-like domain
PfamPF086702.2E-51700842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAAAVAARGA SGGGLDKQAM DAGKYVRYTP EQVEALERVY AECPKPSSIR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRD KQRKEASRLQ AVNRKLTAMN KLLMEENERL QKQVSQLVHE  120
NAYMRQQLQK ASLANDTSCE SVVTTPQNSL RHASNPAGLP SIAEETLAEF LSKATGTAVD  180
WVQLPGMKPG PDSVGIVAIS HGCNGVAARA CGLVNLEPTK IVEILKDRPS WFRDCRSLEV  240
FTMFPAGNGG TIELVYMQMY APTTLAPARD FWTLRYTTSL EDGSLVVCER SLSGSGGGPN  300
AASAHQFVRA EMLPSGYLIR PCDGGGSIVH IVDHLDLEAW SVPEVLRPLY ESSRVVAQKM  360
TTAALRYIRQ VALEMSGEVV YALGRQPAVL RTFSQRLSRG FNDAINGFND DGWSLMDSDG  420
VEDIVIATNS TKKIRTDANS ANAFSVTGGV ICARASMLLQ SVPPALLVRF LREHRSEWAD  480
YNMDAYCAAT LKASSCSFPA LRPTRFPGSQ IIMSLGHTVE NEEILEVVRL EDQAITQDEA  540
ASPRDVHLLQ LCCGIDENAV GSCFQLVFAP IDEHFPDDAP LISSGFRVIP LDTKAVKHLL  600
LDAITSTRTL DLASSLEVGN ATQRTSTEKS PCDYSLRSVL TIAFQFPYEM HLQESIAATA  660
RQYVRSIVSA VQRVAMAIAP SRPGSDVGQK LLPGSPEAST LAHWICQSYH YHLGLELLRC  720
SDEAGDSLLN MLWHHQDAIL CCSFKVQPVF SFANQAGLDM LETSLVALQD ISLDKIFDEP  780
ERKALYAEFA KLMEQGYVYL PAGVCLSGMG RHVSYEQAIA WKVLSEDNNV HCLAFCFVNW  840
SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093893.10.0homeobox-leucine zipper protein HOX9-like isoform X1
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A199UR220.0A0A199UR22_ANACO; Homeobox-leucine zipper protein HOX10
STRINGXP_008791541.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein