PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007649.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 286aa MW: 29951.6 Da PI: 6.3471

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007649.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	108.8	2.6e-34	47	102	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 l+cprCdstntkfCyynnys sqPry+CkaCrr+Wt+GG+lrnvPvGgg ++++++ Aco007649.1 47 LRCPRCDSTNTKFCYYNNYSRSQPRYLCKACRRHWTEGGTLRNVPVGGGHKNKRNK 102 68***********************************************9887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-23	41	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-31	47	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.888	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGLISQQSSV SSADWSRLGM LSGSGGIEAP KPLPRNQLQR PQIWPLLRCP RCDSTNTKFC 60 YYNNYSRSQP RYLCKACRRH WTEGGTLRNV PVGGGHKNKR NKATTSKAAT TATATATATA 120 AAATTATTAA ATAINSSSMD DPATAIFPEI LRRVLLHPPL PPPVESVDYS VMSTLTSSLQ 180 SDQIGNIAAE PNTTVSSYGS ALAQVSFFGY SDEGLGPMSS ALNAWHVAPH MQPPLVSSGG 240 GEAVADALEA SAATASGLWM SGWPDEEVSG LAVPELDLPL TSDDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093476.1	0.0	dof zinc finger protein DOF5.3-like
TrEMBL	A0A199V6P5	1e-155	A0A199V6P5_ANACO; Dof zinc finger protein DOF5.3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-31	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Aco007649.1