PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007619.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 356aa    MW: 39466.8 Da    PI: 5.5654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007619.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.8e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l d++ ++G g+W+ ++++ g+ R +k+c++rw +yl
      Aco007619.1 15 KGLWSPEEDRKLRDYILRYGHGCWSVVPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP

2Myb_DNA-binding55.99.9e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E+e++ +++++lG++ W++Ia +++ gRt++++k++w++yl
      Aco007619.1  68 RGTFSLQEEEIIMKLHAMLGNK-WSRIAMHLP-GRTDNEVKNHWNSYL 113
                      899*******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9651062IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-211165IPR009057Homeodomain-like
SuperFamilySSF466893.48E-2812109IPR009057Homeodomain-like
SMARTSM007172.2E-111464IPR001005SANT/Myb domain
PfamPF002492.9E-131562IPR001005SANT/Myb domain
CDDcd001672.23E-101862No hitNo description
PROSITE profilePS5129427.53663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2566117IPR009057Homeodomain-like
SMARTSM007174.4E-1667115IPR001005SANT/Myb domain
PfamPF002495.6E-1668113IPR001005SANT/Myb domain
CDDcd001671.49E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGCRSCEKPK VNCRKGLWSP EEDRKLRDYI LRYGHGCWSV VPAKAGLQRN GKSCRLRWIN  60
YLRPGVKRGT FSLQEEEIIM KLHAMLGNKW SRIAMHLPGR TDNEVKNHWN SYLKKKVLKI  120
EGSTTPNSDN QTVRLRQYIE ETNGQISASF SSDFVESSST DSSLTATTKA GICFSDGRPQ  180
TAFPKVLFAD WLAMGCANNQ IVTNEEMNCQ LDAISNVTVH SHDDTFCQNS TSDASEFVES  240
SSMDSSLTNT YNAHDSGVLF TDWVFTDHVN SQSAPSANGA IDSHLDSNSN DQMLTPGPVQ  300
VDAPTTIDAI HELGGCGIYA ETRSQFEPAS QIQGCEFYDL FSSVDASFGN FWHEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094042.10.0transcription factor LAF1-like
TrEMBLA0A199V0900.0A0A199V090_ANACO; Transcription factor LAF1
STRINGGSMUA_Achr4P29410_0013e-86(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.14e-56myb domain protein 19