PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007619.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 39466.8 Da PI: 5.5654 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 5.8e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l d++ ++G g+W+ ++++ g+ R +k+c++rw +yl Aco007619.1 15 KGLWSPEEDRKLRDYILRYGHGCWSVVPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 9.9e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+e++ +++++lG++ W++Ia +++ gRt++++k++w++yl Aco007619.1 68 RGTFSLQEEEIIMKLHAMLGNK-WSRIAMHLP-GRTDNEVKNHWNSYL 113 899*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.965 | 10 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 11 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.48E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.536 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGCRSCEKPK VNCRKGLWSP EEDRKLRDYI LRYGHGCWSV VPAKAGLQRN GKSCRLRWIN 60 YLRPGVKRGT FSLQEEEIIM KLHAMLGNKW SRIAMHLPGR TDNEVKNHWN SYLKKKVLKI 120 EGSTTPNSDN QTVRLRQYIE ETNGQISASF SSDFVESSST DSSLTATTKA GICFSDGRPQ 180 TAFPKVLFAD WLAMGCANNQ IVTNEEMNCQ LDAISNVTVH SHDDTFCQNS TSDASEFVES 240 SSMDSSLTNT YNAHDSGVLF TDWVFTDHVN SQSAPSANGA IDSHLDSNSN DQMLTPGPVQ 300 VDAPTTIDAI HELGGCGIYA ETRSQFEPAS QIQGCEFYDL FSSVDASFGN FWHEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020094042.1 | 0.0 | transcription factor LAF1-like | ||||
TrEMBL | A0A199V090 | 0.0 | A0A199V090_ANACO; Transcription factor LAF1 | ||||
STRING | GSMUA_Achr4P29410_001 | 3e-86 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 4e-56 | myb domain protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Aco007619.1 |