PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007609.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 313aa MW: 36148.4 Da PI: 6.9553

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007609.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.9	7.5e-57	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv+++k++l +vik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s Aco007609.1 7 VPPGFRFHPTDEELVDYYLRKKVASRKIDL-DVIKDVDLYKIEPWDLQEkcKIGTEEQsEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYS- 102 69**************************.9***********952444444445**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k++lvg++ktLvfykgrap+g+k+dW+mheyrle Aco007609.1 103 KNNLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-61	5	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.341	7	157	IPR003441	NAC domain
Pfam	PF02365	9.0E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SRKIDLDVIK DVDLYKIEPW DLQEKCKIGT 60 EEQSEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YSKNNLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEY GSSSQEEGWA VCRVFKKRAT ATQRLSEHES PCWYNDHAPF 180 IPDLDSPKMN RLGHQTDPSF ETHLYSCRPE LELNHFLPHE PFLQLPQLVS PKLMNCISHA 240 ANLQASTISS HEELIHQPSN QLHAIAICGN NGGTDQSSEH VTDWRVLDKF VASQLSHDNA 300 NKEPNYSDSA NMF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-52	6	158	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020094490.1	0.0	NAC domain-containing protein 7
Refseq	XP_020094491.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-125	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A199VLF9	0.0	A0A199VLF9_ANACO; NAC domain-containing protein 7 (Fragment)
STRING	XP_008812366.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-117	NAC 007

Link Out ? help Back to Top
Phytozome	Aco007609.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]