PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007581.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 1523aa    MW: 168665 Da    PI: 9.1722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007581.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-0615021521525
                   --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH    5 lCrffartGtCkyGdrCkFaH 25  
                    C+ f+++G+Ck G++CkF H
  Aco007581.1 1502 VCK-FYESGYCKKGPSCKFLH 1521
                   589.9999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001511.6E-4315400IPR019835SWIB domain
Gene3DG3DSA:1.10.245.103.3E-27317402IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.13E-21318396IPR003121SWIB/MDM2 domain
PfamPF022015.7E-17322395IPR003121SWIB/MDM2 domain
PROSITE profilePS5136028.839458593IPR004343Plus-3 domain
SMARTSM007193.5E-47458570IPR004343Plus-3 domain
SuperFamilySSF1590421.7E-33459590IPR004343Plus-3 domain
PfamPF031262.4E-23463568IPR004343Plus-3 domain
SuperFamilySSF552771.57E-15746811IPR003169GYF domain
PROSITE profilePS5082913.619757809IPR003169GYF domain
SMARTSM004442.7E-10758811IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.5E-14759812IPR003169GYF domain
PfamPF022135.5E-10760801IPR003169GYF domain
PROSITE profilePS5010313.78814971522IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-615001522IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-515021521IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-415021521IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1523 aa     Download sequence    Send to blast
MAPFLTRSSA PTRSCRLRLL LLLRLRLRLR LRLRRLRLRR CCRNERRRRR GQRRRRRRRT  60
EARPTAEGPG RREGPAGEEE GRGGGGGRVL YLLRRGKSRG LRSGCPKVYH PACINRDESF  120
FRSRVRWNCG WHLCSMCGKA AQYMCYTCTY SLCKKCINAA RFFCVRGSKG FCETCFSTVM  180
LIESKEDEKE KKVVVDFDDK NSWEYLFKLY WLDQKRRLSL TLEELSNAKN PRKNSGASRN  240
EQESSDELYD ANNDQDVSSD SSPGKRSRGI SSRKKVRKRP KNRVDHGNSA KSVENIVTEV  300
QISLKKVEGD RTSMSDDVEW ASPVLLEFVG HMRGGDKSPV SQFDVQSLLL EYIKRNNLRD  360
PRRKSQIICD TRLQNLFGKT RVGHFEMLKL LEAHFLMKEP SQVGNISNQG GVSHLDPGQM  420
YVEEHSDMST KLSPDKRRRN RKKMEEREPQ TNLDDYAAID VHNINLIFLR RSLMEDLIDA  480
HDGDTFGEKV VGTFVRIRIS NTGQKQDIYR LVKVVGTSKV AERYKIGKKT TDIALEILNL  540
DKKEVFTIDA ISNQEFTEEE CRRLRQSIKC GLLTRLTVGY IQEKARILQS VRVKDIMETE  600
KLRLSHLRDR AKKLQLLATP EERVRRFNEV PEIHTDPHMD PEYESAEEIT DGKRIGNNNI  660
SRSRESRRKG RGPFASGKTV GNSDPFTVVD DKEKLPWKQD TDFSRMNGWD TPKSQTSVTS  720
PESSVTKPAH GYGAAPITPS PVSSAFSIPP DISESDDKVW HYKDPGGVVQ GPFSISQLDK  780
WSNYFPRDLR VWLTFEREEN SLLLTDILRT FQKDSPRIAG NTGAKSESAW GGNDYRNTRQ  840
NNTMFSSTGT NTGTLASRSD PKVEANYAQK GRFGASPRGW ESSKDANSWH GQVQNYSGPA  900
LTAPVSARTD GPPVQHGRGL PVGDFSRWNN GQDSGSVWSP SKSEPLHPGN QSGESHNSNR  960
SNSGQQFASQ WPSDSYTVPS PTPQLSSRDW SGALSPSTAS ASGSMPISIS GGKHQSTTAA  1020
IKPTLTASLA DSAAAGSLNS ANSVLKLSER AQGGGSCSES SGSVPSMTKT EQTAEAIQNQ  1080
DKIGAFSDSH LSTKQEIPSE FGAKNKLINQ SAVAVDTPFK DTKNFFESDC PSPTPKCRRQ  1140
DPSGTQPEEV EMRQTWPEAD DTKDIKSLVP DPTSVALSLE LPDSPACVPC EADSVELHSR  1200
VTAEELGDRD SISIADYLDN SLLVHPEPND VDPGSSTKPI TETIVLELFT DQRSGTPNKQ  1260
ELASRKEEPD SSCNNPVSPG RESSFFRPEP ILNWESLDDS TNTNWSLPSP TPASQPSGLN  1320
ALDGSSAGHG TGEKHVSSSS WKVTTQNPET VARVAQGNAE SVNSSLSELR APPKDTNPTI  1380
GWGASVQGNP NLTSSWITPG QENNPISGWG PMTLGNTSKN FNLEEPRNPA IANPTAGWGT  1440
ALGNTNRSWS SPVGNADTYG NSYFDNRDLA HGGGKSSRSR SETGGGWGSS RPPSKGQAQR  1500
GVCKFYESGY CKKGPSCKFL HQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12333RLRLRLRLRLR
24958RGQRRRRRRR
35157QRRRRRR
45258RRRRRRR
55459RRRRRT
6276282RKRPKNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093697.10.0zinc finger CCCH domain-containing protein 19-like
TrEMBLA0A2H3Y0V70.0A0A2H3Y0V7_PHODC; zinc finger CCCH domain-containing protein 19-like
STRINGXP_008791654.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding