PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007563.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 678aa    MW: 73096.5 Da    PI: 9.1891
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007563.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.27e-21104166163
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                  rW++qe+laL+++r++m+ ++r++ lk+plW+evs+k+ e g++rs+k+Ckek+++ +   ++
  Aco007563.1 104 RWPRQETLALLKIRSDMDAAFRDATLKGPLWDEVSRKLGELGYKRSAKKCKEKFRERSEVLQA 166
                  8*****************************************************986665555 PP
2trihelix104.66.9e-33450535187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi++r+ ++ ++++   k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
  Aco007563.1 450 RWPKTEVHALIKLRTGLDMQYQEMGPKGPLWEEISGRMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 535
                  8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.042101163IPR001005SANT/Myb domain
PROSITE profilePS500906.411103161IPR017877Myb-like domain
PfamPF138376.6E-12103159No hitNo description
CDDcd122031.08E-22103158No hitNo description
SMARTSM007170.29447509IPR001005SANT/Myb domain
CDDcd122032.37E-29449514No hitNo description
PROSITE profilePS500907.271449507IPR017877Myb-like domain
PfamPF138372.0E-22449536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MQQQQQQPQQ QQQRGGSQQY GGPPPHPELT PFPSRMLGIA DPPPQTVLQA QLAEAASPIS  60
SRPPQPPPPP SFEELIPSSV ADEEALAAGE DGERGGGGAS GGNRWPRQET LALLKIRSDM  120
DAAFRDATLK GPLWDEVSRK LGELGYKRSA KKCKEKFRER SEVLQAHERR RRGPAGRQDV  180
PLLHAARSPP PQRGATAAAS TPSSIAFAAP MSGPPRPRIH PIPISSAAPP PIPEQSIHGI  240
PAASAAPPAA AAAAAAAAVA GFSFSSKHFL VGFGRIRRRD GGGGEQEQQQ QQQHVMERQE  300
EMQKRFLETL EKREQDRAMR EEAWRRQETA RLAREQELLA QERAMATTRA AAVVSFIQKI  360
SGQTIQLPAM PDASITVVTP SPAPPPQPPP PPPQKPPLST PLPQKEKSGE NVGLKESAST  420
DIVVFGAQGG GLQDPASNVA FEAAGPPSSR WPKTEVHALI KLRTGLDMQY QEMGPKGPLW  480
EEISGRMRRL GYNRSAKRCK EKWENINKYF KKVKESNKKR PEDAKTCPYF HQLDALYRRK  540
LDRASGGGDA GVPRQQQQQQ APPQQLETNT NAPSSQEGAD ALTLMAAASS SSHQPPSETD  600
TKNNGNRSGG GVQTSNGGLA PVLATNKPGD AVTGEGEKID EGGSDNMDHD YDDDDDDDDE  660
ERGGGRTKKS RRSPPAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154KRSAKKCKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6650810.0KM665081.1 Ananas bracteatus clone 50170c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398094.11e-163PREDICTED: trihelix transcription factor GTL1-like isoform X1
RefseqXP_009398096.11e-164PREDICTED: trihelix transcription factor GTL1-like isoform X3
TrEMBLA0A426Y2A11e-160A0A426Y2A1_ENSVE; Uncharacterized protein (Fragment)
TrEMBLA0A444CI791e-160A0A444CI79_ENSVE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-62Trihelix family protein