PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 213aa MW: 24386.9 Da PI: 9.6646 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.3e-20 | 84 | 138 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+ql Le+ F ++++++ ++++eLA+kl+L+ rqV vWFqNrRa+ k Aco007497.1 84 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNRRARSK 138 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.2 | 6.1e-35 | 84 | 171 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k+q++lLE+sF ++++L+++ K+ela++L+l+prqv+vWFqnrRAR k+kq E++ye+Lk+++++l+een++L+++ eeLr Aco007497.1 84 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNRRARSKLKQNEVNYEMLKKCCERLSEENQKLKEKLEELR 171 69************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 64 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.01E-20 | 72 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-19 | 82 | 144 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-17 | 84 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.54E-17 | 84 | 141 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.3E-10 | 140 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MTILCLGLGG QDGESRKPKR RREVDPRPPV KFDVLFPSQS NQNNKDMINE SVGNENYASL 60 CKSRSRSVNN GVESGGEDGN GCTRKKLRLT KDQLALLESS FVQHNTLNSS MKQELAHKLN 120 LSPRQVEVWF QNRRARSKLK QNEVNYEMLK KCCERLSEEN QKLKEKLEEL RLMRLKLPFY 180 VQQYQNEHTL IMCPSCKLKG EDDALASVKI SQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 22 | RKPKRRRE |
2 | 82 | 88 | TRKKLRL |
3 | 132 | 140 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020099545.1 | 1e-155 | homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 1e-43 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A199VWQ2 | 1e-143 | A0A199VWQ2_ANACO; Homeobox-leucine zipper protein HAT14 | ||||
STRING | Lus10021064 | 5e-43 | (Linum usitatissimum) | ||||
STRING | Lus10029293 | 8e-43 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-36 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Aco007497.1 |