PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007448.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 321aa    MW: 36174.7 Da    PI: 8.8183
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007448.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.96.7e-52111431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  lppGfrFhP+d+elv +yL kkv++        +   +++ +vd++k+ePwdLp++++ + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd++v
  Aco007448.1  11 LPPGFRFHPRDDELVLDYLVKKVASGGtngvggFYGGHMMVDVDLNKCEPWDLPEMARVGLKEWYFFSLRDRKYATGQRTNRATRSGYWKATGKDRAV 108
                  79*********************9999555544333347***************88888999************************************ PP

          NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +g lvg++ktLvfy+grapkg+ktdWvmhe+r 
  Aco007448.1 109 CR-RGVLVGMRKTLVFYEGRAPKGKKTDWVMHEFRR 143
                  *9.99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-572183IPR003441NAC domain
PROSITE profilePS5100553.96711183IPR003441NAC domain
PfamPF023654.8E-2612142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSMISMVEAR LPPGFRFHPR DDELVLDYLV KKVASGGTNG VGGFYGGHMM VDVDLNKCEP  60
WDLPEMARVG LKEWYFFSLR DRKYATGQRT NRATRSGYWK ATGKDRAVCR RGVLVGMRKT  120
LVFYEGRAPK GKKTDWVMHE FRREEQQHQQ QQQQQHHHHH HHTTKFSYQK ILEDWVLCKV  180
FFKSREAISR PSMPETSHED DGSTSLPPLV DNYITFDHAA PPSLEGYEQV PCFSAPAPGP  240
PAAPYVPTVE NSFPAKGSSN TGGGFPHSGS SDKRAIKAVL SQFSRLENTP KREFPQGLDQ  300
GGGFESYLAE NGLSHLWNSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-47718611171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100350.10.0NAC domain-containing protein 21/22-like
TrEMBLA0A199UIL50.0A0A199UIL5_ANACO; NAC domain-containing protein 21/22
STRINGXP_008806836.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.27e-85NAC domain containing protein 1