PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LSD | ||||||||
Protein Properties | Length: 163aa MW: 17923.8 Da PI: 9.7751 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.4 | 1e-12 | 33 | 56 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggCrtlL Y+rGA +VRC+ C+ Aco007447.1 33 CGGCRTLLIYTRGAENVRCSRCNL 56 **********************96 PP | |||||||
2 | zf-LSD1 | 40.6 | 4.1e-13 | 71 | 95 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr +L+YP+GA+ V+Ca+C+++ Aco007447.1 71 CGRCRRILMYPYGASTVKCAVCHHI 95 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-13 | 30 | 58 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-11 | 33 | 56 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.5E-12 | 68 | 98 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-12 | 71 | 95 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MQHDNLYFPL RVLSYNFKEY IKFTGTEMAQ LVCGGCRTLL IYTRGAENVR CSRCNLINSS 60 TTASRVAHVT CGRCRRILMY PYGASTVKCA VCHHITNVGM NNNSRLPLPS WRPNASTPLP 120 TPVNVAPSNS MRQTVIVENP MSVDENGKLV SNVVVGVTTK KT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020100354.1 | 1e-96 | protein LSD1-like isoform X2 | ||||
Swissprot | Q6ASS2 | 2e-45 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A199UI87 | 3e-95 | A0A199UI87_ANACO; Protein LOL3 | ||||
STRING | EMJ13362 | 1e-54 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 7e-46 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco007447.1 |
Publications ? help Back to Top | |||
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