PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007423.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 777aa    MW: 84329.7 Da    PI: 5.9807
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007423.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-2199154156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Aco007423.1  99 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 154
                  688999***********************************************999 PP
2START223.85.2e-702925121206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++el+++a+++ep+W++      e +n+de+++ f+++ +      ++ea+r++ vv+m++ +lve+l+d++ qW++ +     +a tlev+
  Aco007423.1 292 ELAVAAMEELIRMAQLGEPLWTQGLdgltETLNEDEYVRAFPRGIGpkqfgLKSEASRDTSVVIMNHINLVEILMDVN-QWSTVFSgivsRAITLEVL 388
                  57899********************9*****************999********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+ds ++ p    v+R++++pSg+li++++ng+skv+wvehv++++r+
  Aco007423.1 389 STGvagnynGALQVMSAEFQVPSPLVPtRECLFVRYCKQHADGTWAVVDVSLDSLRPSP----VMRCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRS 482
                  *********************************************************98....7********************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h ++++lv+sgla+gak+wv+tl+rqce+
  Aco007423.1 483 VHDIYKPLVNSGLAFGAKRWVSTLDRQCER 512
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-2284154IPR009057Homeodomain-like
SuperFamilySSF466892.97E-2086156IPR009057Homeodomain-like
PROSITE profilePS5007117.39496156IPR001356Homeobox domain
SMARTSM003891.1E-2097160IPR001356Homeobox domain
CDDcd000867.28E-2098157No hitNo description
PfamPF000462.4E-1899154IPR001356Homeobox domain
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084845.333283515IPR002913START domain
SuperFamilySSF559615.49E-36285514No hitNo description
CDDcd088755.12E-128287511No hitNo description
SMARTSM002345.6E-67292512IPR002913START domain
PfamPF018529.5E-58293512IPR002913START domain
Gene3DG3DSA:3.30.530.206.9E-6392511IPR023393START-like domain
SuperFamilySSF559618.46E-24531766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MPTGIMIPAR NVPSMIGRSN GVAYGSSSAL SLGQPSLVEG QQIPLQNQHH QLVDIPQSVV  60
PEGEMVRPRE EDFESKSGSE NIEGAASGDD QDPNQRPRKK RYHRHTQHQI QELEAFFKEC  120
PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH ENTQLRADNE KLRAENMRYK  180
EALGNASCPN CGGPAAIGEM SFDEHHLRIE NARLREEIDR ISGIAAKYVG KPMTSSYPLL  240
SNPNMSSRSP LDLGVGGGFG VQPGIGSEMF GAGELLRSVS GQSEIEKPMV IELAVAAMEE  300
LIRMAQLGEP LWTQGLDGLT ETLNEDEYVR AFPRGIGPKQ FGLKSEASRD TSVVIMNHIN  360
LVEILMDVNQ WSTVFSGIVS RAITLEVLST GVAGNYNGAL QVMSAEFQVP SPLVPTRECL  420
FVRYCKQHAD GTWAVVDVSL DSLRPSPVMR CRRRPSGCLI QEMPNGYSKV IWVEHVEVDD  480
RSVHDIYKPL VNSGLAFGAK RWVSTLDRQC ERLASVMASN IPSGEIGVIT TPEGRKSMLK  540
LAERMVISFC GGVTASTTHQ WTTLSGSGAE DVRVMTRKSI DDPGRPPGIV LNAATSFWLP  600
VSPKRVFDFL RDESSRSEWD ILSNGGIVQE MAHIANGRDH GNCVSLLRVN SANSNQSNML  660
ILQESCTDAT GSYVIYAPVD VVAMNVVLNG GDPDYVALLP SGFAILPDGP VAVPAGGAAD  720
GGSASGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAVS GAKNVQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100432.10.0homeobox-leucine zipper protein ROC2-like
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A199VX350.0A0A199VX35_ANACO; Homeobox-leucine zipper protein ROC2
STRINGXP_008784552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]