PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007275.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 685aa MW: 76658.6 Da PI: 5.2941

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007275.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.6e-14	478	524	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL A+eY+k+L+ Aco007275.1 478 NHVLAERRRREKLNERFIVLRSLVPFV-----TKMDKASILGDAIEYVKQLR 524 7999********************8.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-52	9	193	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.923	474	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-19	477	538	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.49E-15	478	525	No hit	No description
Pfam	PF00010	5.3E-12	478	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-19	478	540	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-17	480	529	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MVALSPIRLQ KALQSVAQSI QWTYSLFWNP CPQQGVLVWG DGYYNGAIKT RKTVQPAEVS 60 AEEVTLQRSQ QLRELYESLS AGEASQQQQQ QLQLARRPSA ALSPEDLTES EWFYLMCISF 120 SFPPGSGLPG KAFARRRHVW LTRANEADSK VFSRAILAKT VVCIPLMDGV LELGTTEMVE 180 EDTGLIKHAK SFFAEHHEIQ SMPALSEQST SNPAKYNEPP SFQVGVTMHR MHAEPTESDR 240 QNDEDDDEED DDHDDDDDEE DEIEGGSGSE VGTLKCSHMI TPTLTRIEGA TTPNAEHDEL 300 MQLGLSQNVR LGSPDDCSNN LNTQLQMVGV CCNTSGVSNH QREDETYHCW NFLHEDICSE 360 LQQQSSVQAQ ELSQEDAHYS ETVTTILRHN SSRGDESKSN DYFVPSRQTA FAGWNSTRDH 420 PQIVLSEGTS QWLLKTMLFR VPTLHCRYKD ENSPPSIEGE GGGSRSRKGA AQEEPSANHV 480 LAERRRREKL NERFIVLRSL VPFVTKMDKA SILGDAIEYV KQLRKRMQDL ESRNRQMESL 540 TKTAELQRPG SSKDPNVPRG SGSPQGSGVD HVATSQQRAF SSDKRKIRVL EGTRVADAPS 600 TNVQVSIIEA DALLEMQCPY KEGLLLKIMQ TIHELRLEIM SIQSSSVNGT LFAELRAKVK 660 EMNGKRASIL EVKKAIYRVF SNNR*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MVALSPIRLQ KALQSVAQSI QWTYSLFWNP CPQQGVLVWG DGYYNGAIKT RKTVQPAEVS  60
AEEVTLQRSQ QLRELYESLS AGEASQQQQQ QLQLARRPSA ALSPEDLTES EWFYLMCISF  120
SFPPGSGLPG KAFARRRHVW LTRANEADSK VFSRAILAKT VVCIPLMDGV LELGTTEMVE  180
EDTGLIKHAK SFFAEHHEIQ SMPALSEQST SNPAKYNEPP SFQVGVTMHR MHAEPTESDR  240
QNDEDDDEED DDHDDDDDEE DEIEGGSGSE VGTLKCSHMI TPTLTRIEGA TTPNAEHDEL  300
MQLGLSQNVR LGSPDDCSNN LNTQLQMVGV CCNTSGVSNH QREDETYHCW NFLHEDICSE  360
LQQQSSVQAQ ELSQEDAHYS ETVTTILRHN SSRGDESKSN DYFVPSRQTA FAGWNSTRDH  420
PQIVLSEGTS QWLLKTMLFR VPTLHCRYKD ENSPPSIEGE GGGSRSRKGA AQEEPSANHV  480
LAERRRREKL NERFIVLRSL VPFVTKMDKA SILGDAIEYV KQLRKRMQDL ESRNRQMESL  540
TKTAELQRPG SSKDPNVPRG SGSPQGSGVD HVATSQQRAF SSDKRKIRVL EGTRVADAPS  600
TNVQVSIIEA DALLEMQCPY KEGLLLKIMQ TIHELRLEIM SIQSSSVNGT LFAELRAKVK  660
EMNGKRASIL EVKKAIYRVF SNNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	2e-19	8	193	12	192	Transcription factor MYC3
4rqw_B	2e-19	8	193	12	192	Transcription factor MYC3
4rs9_A	2e-19	8	193	12	192	Transcription factor MYC3
4yz6_A	2e-19	8	193	12	192	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	487	ERRRRE
2	483	488	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020113578.1	0.0	basic helix-loop-helix protein A-like isoform X1
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	A0A2H3XZ81	0.0	A0A2H3XZ81_PHODC; basic helix-loop-helix protein A isoform X2
TrEMBL	A0A2H3XZE5	0.0	A0A2H3XZE5_PHODC; basic helix-loop-helix protein A isoform X1
STRING	XP_008790987.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8863	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco007275.1

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001]