PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007204.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 532aa    MW: 58719.6 Da    PI: 4.5292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007204.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-154188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l ++v+++G g+W+ + +t g+ R +k+c++rw ++l
      Aco007204.1 41 KGPWTADEDSILSEYVEKFGEGNWNNVQKTTGLARNGKSCRLRWANHL 88
                     79******************************************9986 PP
2Myb_DNA-binding42.41.6e-1395137246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++eE++l +++++q G++ W++ a  +  gRt++++k++w++
      Aco007204.1  95 CPFSPEEEQLVAELHAQIGNK-WARMATQLT-GRTDNEIKNYWNT 137
                      68*******************.********9.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3923688IPR017930Myb domain
SMARTSM007172.2E-114090IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-2840135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-204294IPR009057Homeodomain-like
CDDcd001671.29E-94388No hitNo description
PfamPF139212.0E-1544104No hitNo description
PROSITE profilePS5129422.3689143IPR017930Myb domain
SMARTSM007172.6E-1293141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2295142IPR009057Homeodomain-like
CDDcd001671.23E-896137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MKRAREESDN EMAPNDQIGS PSANEDSSGG SSADGVVVLK KGPWTADEDS ILSEYVEKFG  60
EGNWNNVQKT TGLARNGKSC RLRWANHLRP NLKKCPFSPE EEQLVAELHA QIGNKWARMA  120
TQLTGRTDNE IKNYWNTRIK RQQRAGLPLY PPNVCARSKE NQQSEFNCGD KQPHELLQGN  180
TFNISDITFD NLHHNQVTLP YVPSLPNNYF NSMLDQAYDP QRYIFTNSMN TVNQPTESGS  240
FFPGYSSGMS SGFPSFKELL NEPGKIQQTF GVSNPYYTEP SRYRLDYRDS AFLGSQSHLN  300
GNLPASGHIT SPMKPELPSL QDTETDTFSC LENPTAPPTP CEPTDSYFQY PAASESVKSE  360
YVSSQHDGLL DALVHQSLGK VSTKNQLESF KTSPTSSVAS PGDMFACSEL NNYLENLAEY  420
NDPISPLGFS AASVFNVSTP QISGGSLNEF PPTEVPSGFE TTLPADLHFP DLKMGEQDTL  480
SHPGTLRPDA LLGSFWRRTE SSQGTNEQSP LDDAMAMLPD EDLGDENKTM P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28351421107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113516.10.0transcription factor GAMYB-like
RefseqXP_020113517.10.0transcription factor GAMYB-like
RefseqXP_020113518.10.0transcription factor GAMYB-like
RefseqXP_020113519.10.0transcription factor GAMYB-like
TrEMBLA0A199VD950.0A0A199VD95_ANACO; Transcription factor GAMYB
STRINGXP_008786776.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.19e-80myb domain protein 65