PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 363aa MW: 38823.7 Da PI: 6.9677 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.2 | 5e-40 | 52 | 112 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCdstntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk+k ss Aco007029.1 52 PDQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKGCRRYWTQGGSLRNVPVGGGCRKKKISS 112 6899*****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 50 | 109 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-33 | 53 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.966 | 56 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 58 | 94 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEVHSAHHQM ASHIPLEEVL ISCPRPQQQQ QQQQQQNNNN NNNQERKVRP HPDQALKCPR 60 CDSTNTKFCY YNNYSLTQPR YFCKGCRRYW TQGGSLRNVP VGGGCRKKKI SSSSSSSAAA 120 PSSSSSFSSP SSSSSSFKKD LVTTSPNALL PTSLIAPPLS YDPIGLSLTF ARPMRGLGFD 180 DHDTSFLLGN PNPSTTNLGI TTVPASAAND GFLDILRGGF LGNNYPSGFP NLYYGFGGGG 240 CNNGSVKMEG GVSGEGEEGM VLPFEGGDNH NMDGVTQTVG ESCHGSNCNK AMLEGGESKV 300 VMGLQWEMSG DGNNSSSNNN NNNNNNNNNN MMVESAGRDY WNNGVLGPAT TSWHGLINSS 360 LI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM667874 | 1e-141 | KM667874.1 Ananas bracteatus clone 53312a microsatellite sequence. | |||
GenBank | KM667875 | 1e-141 | KM667875.1 Ananas bracteatus clone 53312b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114433.1 | 0.0 | dof zinc finger protein PBF-like isoform X2 | ||||
Refseq | XP_020114434.1 | 0.0 | dof zinc finger protein PBF-like isoform X2 | ||||
TrEMBL | A0A199W6J0 | 0.0 | A0A199W6J0_ANACO; Dof zinc finger protein PBF |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 7e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco007029.1 |