PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006979.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 320aa    MW: 36289.6 Da    PI: 5.0656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006979.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.8e-52101381129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhP+deelv++yL kkv+++ +    ++ evd+++ ePw+Lp+ +k + +ewyfFs rd+kyatg r+nratk+gyWkatgkd+ ++   ++
  Aco006979.1  10 LPPGFRFHPSDEELVCHYLYKKVANEGVAQ-GTMVEVDLHTREPWELPEVAKLSANEWYFFSFRDRKYATGLRTNRATKTGYWKATGKDRMIYYPkSH 106
                  79*************************887.78***************88888999*************************************98455 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                  + vg++ktLvfy+grap+g+kt+Wvmhe+rle
  Aco006979.1 107 TIVGMRKTLVFYSGRAPNGVKTSWVMHEFRLE 138
                  669**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-618156IPR003441NAC domain
PROSITE profilePS5100558.66610156IPR003441NAC domain
PfamPF023651.8E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGLRDIESTL PPGFRFHPSD EELVCHYLYK KVANEGVAQG TMVEVDLHTR EPWELPEVAK  60
LSANEWYFFS FRDRKYATGL RTNRATKTGY WKATGKDRMI YYPKSHTIVG MRKTLVFYSG  120
RAPNGVKTSW VMHEFRLENP HTPPKEDWVL CRVFHKKKLG DDNTTDCSYL ETYEQENTAN  180
NSSSNNNNNN NNSNSNNSNS DDNNNNNNNN NNNAGCCSSH WDHNQSTPPV TDLPMPDAGH  240
INDEQAGSSL SSTPHYEQDQ YCNSSFNNNL FNLALLRYNF LEFPQEVNSS AVSIGMSSRD  300
GDDYSLLLDL GLEDQDLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5111571169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112435.10.0protein CUP-SHAPED COTYLEDON 3-like
TrEMBLM0U5T81e-120M0U5T8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02760_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.17e-81NAC domain containing protein 74