PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco006877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21667.4 Da PI: 6.4944 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.8 | 4.4e-39 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll +lp +r +a+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l+ael++l Aco006877.1 7 PCGACKFLRRKCVRGCVFAPYFAHEQgAAHFAAIHKVFGASNVSKLLMHLPVGDRCEAAVTIAYEAQARLRDPIYGCVAHIFALQQQVVNLQAELSSL 104 7*************************89*******************************************************************987 PP DUF260 98 ke 99 + Aco006877.1 105 VA 106 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.234 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-38 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MAGFGSPCGA CKFLRRKCVR GCVFAPYFAH EQGAAHFAAI HKVFGASNVS KLLMHLPVGD 60 RCEAAVTIAY EAQARLRDPI YGCVAHIFAL QQQVVNLQAE LSSLVAQAAQ SRGHEQGFLF 120 PPDGDLRMPQ PSVSNDRENI FIDNNGLLDS TTFYDSRACN GTQWFANGDH VSLDMDDKSY 180 CTMGEDLRSV AFGYINGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020113333.1 | 1e-148 | LOB domain-containing protein 29-like | ||||
Swissprot | Q5UG13 | 9e-65 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A199VFA5 | 1e-142 | A0A199VFA5_ANACO; LOB domain-containing protein 29 | ||||
STRING | XP_008794315.1 | 1e-74 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-64 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Aco006877.1 |
Publications ? help Back to Top | |||
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