PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco006737.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 348aa MW: 38726.9 Da PI: 5.221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006737.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	231	268	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L +l+ + +K + a++L++A+ YI+ L Aco006737.1 231 RKEKLGDRITALHQLVSPF-----GKTDTASVLQEAIGYIRFL 268 6677889999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.642	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-10	229	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.39E-6	229	273	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-7	229	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MNRLRSQAQD SPQQPSSSSS SAPPPPPSSS FSSLSSSSSS PSSCSSSSMY THYTNQSNLP 60 NTTLYRQDNQ IFPKSWSQLL LDGLVEEKEE EEDDDDDRMI SSSFAPHFQP KLVENWKDQV 120 LYPPPNTNIV GPKQEGYESG FMYQNKTEDI QITMRAPFWS HALHASSINS CATTSLSSSS 180 SSMLDISKSK PDSNNLPLEI SSDQCNSTTG SALKKARVQI SSVSQPSIKV RKEKLGDRIT 240 ALHQLVSPFG KTDTASVLQE AIGYIRFLHH QIEALCLPHL VDGSTNSRQL EKDERNDVSH 300 EVQFQDQDAC DEPKKDLRSK GLCLVPISLI LYVDRDNKAN YWVYLEPT

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MNRLRSQAQD SPQQPSSSSS SAPPPPPSSS FSSLSSSSSS PSSCSSSSMY THYTNQSNLP  60
NTTLYRQDNQ IFPKSWSQLL LDGLVEEKEE EEDDDDDRMI SSSFAPHFQP KLVENWKDQV  120
LYPPPNTNIV GPKQEGYESG FMYQNKTEDI QITMRAPFWS HALHASSINS CATTSLSSSS  180
SSMLDISKSK PDSNNLPLEI SSDQCNSTTG SALKKARVQI SSVSQPSIKV RKEKLGDRIT  240
ALHQLVSPFG KTDTASVLQE AIGYIRFLHH QIEALCLPHL VDGSTNSRQL EKDERNDVSH  300
EVQFQDQDAC DEPKKDLRSK GLCLVPISLI LYVDRDNKAN YWVYLEPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092832.1	0.0	transcription factor bHLH68-like isoform X1
TrEMBL	A0A199W796	0.0	A0A199W796_ANACO; Transcription factor bHLH133
STRING	VIT_11s0016g03560.t01	5e-83	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2167	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco006737.1