PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006706.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family RAV
Protein Properties Length: 377aa    MW: 39788.6 Da    PI: 10.2664
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006706.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.7e-1364112155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW A+I++      ++r++lg+f  + eAa+a++ a+++++g
  Aco006706.1  64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNAEAEAARAYDVAAQRFRG 112
                  89****9888.8*********3.....5**********99*************98 PP
2B394.47.6e-30194306191
                  EEEE-..-HHHHTT-EE--HHH.HTT.............---..............--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke............esktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                  f+k+ tpsdv+k++rlv+pk++ae+h                 +            +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++ 
  Aco006706.1 194 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqvvgsaspptA---TvaaaaamatatcKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKS 288
                  89***************************99987655550...0555555666667999*************************************** PP

                  --TT-EEEEEE-SSSEE. CS
           B3  74 LkegDfvvFkldgrsefe 91 
                  Lk+gD+++F+++   e++
  Aco006706.1 289 LKAGDVITFHRSTGPEKQ 306
                  **********76544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.43E-1764120IPR016177DNA-binding domain
PfamPF008471.0E-864112IPR001471AP2/ERF domain
CDDcd000184.68E-2464120No hitNo description
SMARTSM003801.4E-2765126IPR001471AP2/ERF domain
PROSITE profilePS5103220.12665120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2065120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.4E-39191320IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-27192300No hitNo description
SuperFamilySSF1019361.31E-28192311IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-23194315IPR003340B3 DNA binding domain
PfamPF023624.1E-27194304IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858194314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEGSCIEEEV DKRPSPLRPP SMPLERVGSG ASVVLDPEGG GGGGGGGGGG GGGHEAESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNAEAEAA RAYDVAAQRF RGRDAVTNFR  120
PLSDTDDGDG ASELLFLSSH SKAEIVDMLR KHTYRDELRQ SRRALGPAAA AAAAGQKACR  180
GGGNYGSGGR DHLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQVVGSASP PTATVAAAAA  240
MATATCKGVL LNFEDAAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKSLK AGDVITFHRS  300
TGPEKQLFID YKPRSASAAA AAAAAAAGGP AGSGRAALRR EPGRDPGRGG GARARPMRRR  360
EAEESCRHAD VIRADV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5319332213125DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6653150.0KM665315.1 Ananas bracteatus clone 50415d microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083994.10.0LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ6L4H41e-123Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A199V1A50.0A0A199V1A5_ANACO; AP2/ERF and B3 domain-containing transcription repressor TEM1
STRINGXP_008791228.11e-143(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-106related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]