PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006704.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 315aa    MW: 34519.2 Da    PI: 6.8502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006704.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-05122141120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C  C+k+F+r  nL+ H+
  Aco006704.1 122 FSCVVCHKTFNRFNNLQMHM 141
                  89*****************9 PP
2zf-C2H213.30.00024219241123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C  Cgk+F  + + ++H +++
  Aco006704.1 219 FACRRCGKRFAVRGDWRTHEKNC 241
                  78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.62E-5117144No hitNo description
PROSITE profilePS501579.993122149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4122141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-6205239No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6205239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.517219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MQLHNNIGGG EEEEEEEQSI LCLSLWPPGQ QNPPSSFSSS RANSRTSAFA FGSGSASTSA  60
FSSLRLSCNR LDEESNVTIA LSIAPPNATS VSASLSTAAT NPTPSQYWIP SAAEILVGAT  120
QFSCVVCHKT FNRFNNLQMH MWGHGSQYRK GSESLRGVTK PPSSPSAAAA AIPASMMRLP  180
CYCCAEGCRN NIEHPRSRPL KDFRTLQTHY RRKHGARPFA CRRCGKRFAV RGDWRTHEKN  240
CGRLWFCICG SDFKHKRSLK DHVRSFGGGH APHIAESLNV ADNGEEGEED EEDIEDPEEA  300
DHHDHIGDDD HAHA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085039.10.0zinc finger protein WIP6-like, partial
SwissprotQ9FX681e-100ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A199VNN11e-173A0A199VNN1_ANACO; Zinc finger protein WIP6
STRINGXP_008780503.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.18e-96C2H2-like zinc finger protein