PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco006604.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 537aa MW: 60714.7 Da PI: 10.0331

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006604.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.4	2.4e-28	200	287	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++++gk++vt+++++HnH la Aco006604.1 200 EFYNTYAENVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPACMTIRLTSNGKYRVTEFVSNHNHMLA 287 6******************97766.************9999.999**********************************997 PP
2	FAR1	88.1	1.3e-27	329	416	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA ++GFsvr+++++ + ++ it+r fvCs+eg+re++k + ++ +++r+etrtgC a++ +++ +dgk++v+++++ HnH+la Aco006604.1 329 EFYSMYAGRIGFSVRRASMTVN-SDNAITRRMFVCSREGFREKKKGA-KRVKKPRPETRTGCPACMIIRLGQDGKYHVSEFVTYHNHQLA 416 6**************99998.5566************9999.99************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-25	200	287	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.4E-24	329	416	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MHVAEGVTIE TSSILRLLLL SSSAVEPNRC GGSGIGCLRG RRTRSRFHEP RRSLITWRRD 60 RETPLTSRVH YTGFRSHGRQ MPENTGSNTK EKKPRLAPAV VFPPPVQPLR PVQIPGNPSV 120 DPRLGHVWPR HLVLLSPYPP WTTQPPVPRE SIPSDSHHHH QREKMSNAPR TDANTPLEVI 180 DEKLLPKVDM LFDSENEAYE FYNTYAENVG FFVRRSTLWT TSKNIITRRT FVCSREGFRE 240 KKKGAKEAKC PRPETRIGCP ACMTIRLTSN GKYRVTEFVS NHNHMLATVS TIHMLRTKKL 300 RRKARAVRAD LVDDSVTTPV FETEDEAYEF YSMYAGRIGF SVRRASMTVN SDNAITRRMF 360 VCSREGFREK KKGAKRVKKP RPETRTGCPA CMIIRLGQDG KYHVSEFVTY HNHQLAASSS 420 AELVMSNRVE NDQDNESDLG DKSAASRAAR SFDSYAFMES QSDVLWDQVE QVLQSRHPDM 480 STLISSISDR PHNPVENVIA GSIHYDKTNH TSFIGSAADG PLTFPFTLSS GTLDYR*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MHVAEGVTIE TSSILRLLLL SSSAVEPNRC GGSGIGCLRG RRTRSRFHEP RRSLITWRRD  60
RETPLTSRVH YTGFRSHGRQ MPENTGSNTK EKKPRLAPAV VFPPPVQPLR PVQIPGNPSV  120
DPRLGHVWPR HLVLLSPYPP WTTQPPVPRE SIPSDSHHHH QREKMSNAPR TDANTPLEVI  180
DEKLLPKVDM LFDSENEAYE FYNTYAENVG FFVRRSTLWT TSKNIITRRT FVCSREGFRE  240
KKKGAKEAKC PRPETRIGCP ACMTIRLTSN GKYRVTEFVS NHNHMLATVS TIHMLRTKKL  300
RRKARAVRAD LVDDSVTTPV FETEDEAYEF YSMYAGRIGF SVRRASMTVN SDNAITRRMF  360
VCSREGFREK KKGAKRVKKP RPETRTGCPA CMIIRLGQDG KYHVSEFVTY HNHQLAASSS  420
AELVMSNRVE NDQDNESDLG DKSAASRAAR SFDSYAFMES QSDVLWDQVE QVLQSRHPDM  480
STLISSISDR PHNPVENVIA GSIHYDKTNH TSFIGSAADG PLTFPFTLSS GTLDYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020103019.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020103020.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A199VNZ2	0.0	A0A199VNZ2_ANACO; Protein FAR1-RELATED SEQUENCE 7 (Fragment)
STRING	OS07T0563600-01	1e-159	(Oryza sativa)
STRING	ORGLA07G0152100.1	1e-159	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aco006604.1