PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco006602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NF-YC | ||||||||
Protein Properties | Length: 335aa MW: 36620.6 Da PI: 6.4194 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.5 | 3e-56 | 139 | 243 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi Aco006602.1 139 QLQTFWANQmleIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 236 89*******8889************************************************************************************* PP NF-YC 96 vprdelk 102 vprdelk Aco006602.1 237 VPRDELK 243 ****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.68E-34 | 114 | 233 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-21 | 161 | 224 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.8E-37 | 162 | 239 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
LSLGFPTGPF DAPLPSSPPR ILWQKKFMLI FLLPMLNFHS SHLSVAGQKL NSTPNMEQSS 60 QPSQPVMGVA TDAAHVAYAT PTYQPAAVVT GAPAVIGTLA PASQPHTSYP PNPNASQHQL 120 AYQQVQQFHH QQQQQQQQQL QTFWANQMLE IEQTTDFKNH SLPLARIKKI MKADEDVRMI 180 SAEAPVIFAK ACEMFILELT LRSWIHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRD 240 ELKDEGLGIP RGAALGAIGA GGAPTESIPY YYVPAPPVAA PGMIVGGAVD PAAAAAAMYV 300 SQQPRPVAFV WQQPQTQQQQ QQQQQQMNDS TQDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-57 | 147 | 239 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 211 | 217 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM664404 | 1e-147 | KM664404.1 Ananas bracteatus clone 49248 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020103022.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_020103023.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_020103025.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_020103026.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_020103027.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_020103028.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_020103029.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 1e-89 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A199VPH0 | 0.0 | A0A199VPH0_ANACO; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_008775725.1 | 1e-118 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2703 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-66 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Aco006602.1 |
Publications ? help Back to Top | |||
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