PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006517.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 273aa    MW: 30524.4 Da    PI: 7.7759
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006517.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-121462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + + ++g +R++k+c++rw++yl
      Aco006517.1 14 KGPWSPEEDAKLKVYIEEHGTGgNWIAPPYKIGIKRCGKSCRLRWLNYL 62
                     79*******************************55************97 PP
2Myb_DNA-binding40.18.4e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Aco006517.1  69 GDFSPEEDKIICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.664962IPR017930Myb domain
SuperFamilySSF466891.61E-2511109IPR009057Homeodomain-like
SMARTSM007171.6E-91364IPR001005SANT/Myb domain
PfamPF002493.8E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-221569IPR009057Homeodomain-like
CDDcd001673.75E-81662No hitNo description
PROSITE profilePS5129421.1863117IPR017930Myb domain
SMARTSM007171.5E-1167115IPR001005SANT/Myb domain
PfamPF002492.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2370117IPR009057Homeodomain-like
CDDcd001677.82E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKVYIE EHGTGGNWIA PPYKIGIKRC GKSCRLRWLN  60
YLRPNIKHGD FSPEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKRLLGK  120
QRRELNGGWN EVVGSQTLNA SALERIRLQI QLQQLHYHHN PSLCSSSKIL QGQCSGNSTN  180
GIVVSEPIST QVVEFDKIDV TNAEASENVD GFILDDLSSP SRDRYVEEDK RMKGAGLNWW  240
AYGDESPMSS NGLFADHNFD SMVQGYGSPY DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102443.10.0transcription factor MYB36-like
SwissprotQ9FKL23e-78MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A199VGT01e-171A0A199VGT0_ANACO; Transcription factor RAX3 (Fragment)
STRINGPavir.J37063.1.p1e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-70myb domain protein 84
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]