PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006470.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 525aa    MW: 55549.8 Da    PI: 7.4975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30192248259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg+nWrKYGqK+vk+se++rsYYrCt+++C++kkk+er+  d++vvei+Y+g Hnhe
  Aco006470.1 192 TDGFNWRKYGQKQVKSSENSRSYYRCTTTSCSAKKKIERCP-DGRVVEIVYRGGHNHE 248
                  6****************************************.***************8 PP
2WRKY104.84.5e-33373430259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ver+++d k ++itYeg+Hnhe
  Aco006470.1 373 TDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVERASDDAKSIVITYEGKHNHE 430
                  7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.758186250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-26188250IPR003657WRKY domain
SuperFamilySSF1182903.66E-23189250IPR003657WRKY domain
SMARTSM007745.8E-31191249IPR003657WRKY domain
PfamPF031062.7E-22193248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-34357432IPR003657WRKY domain
SuperFamilySSF1182904.05E-28364432IPR003657WRKY domain
PROSITE profilePS5081134.199367432IPR003657WRKY domain
SMARTSM007744.5E-38372431IPR003657WRKY domain
PfamPF031061.4E-26374430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAEEAAAAAK SSSPAAWPVA KAEAAPAPTS DSAPKVKGEA AAAAAAAAAG VGMGDGRTFS  60
QLLAGAMASP KAGSGPHAAA PPPILTVPVM AVPCFLAPAA LIESSGFKGQ FAMTHQAALA  120
SVTAQAQLQL QALNSQPSSL PHPILPTVSP AQLQQRSPSI TDENSSTPKS EKPPLSEQKP  180
QSTPALVSNT TTDGFNWRKY GQKQVKSSEN SRSYYRCTTT SCSAKKKIER CPDGRVVEIV  240
YRGGHNHEAP QKTRYPKERG PPSSGPSGDN ETLQVPNKEA NESETTTCKT EQNVGSETPE  300
QQLYCSSDCE GDPGSKNEED LSEEPEPKRR QVDLIKTSNL MTESVATNPA PALKAVREPK  360
VIVQTAYDVG HVTDGYRWRK YGQKIVKGNP NPRSYYRCTH DGCPVRKHVE RASDDAKSIV  420
ITYEGKHNHE QPAFSCNDSK GSPRPSITAK GEQPNAPNAA SDCEPPKDSL PHVDAESNGN  480
KAIELGGEKA LESAQTLLSI RTNPDGIKKP HFGENSPPVA VQNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-29193433878Probable WRKY transcription factor 4
2lex_A7e-29193433878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6664661e-167KM666466.1 Ananas bracteatus clone 51784b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102354.10.0probable WRKY transcription factor 3
TrEMBLA0A199UIA60.0A0A199UIA6_ANACO; Putative WRKY transcription factor 4
STRINGXP_008776488.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.16e-67WRKY DNA-binding protein 3