PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006402.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 295aa    MW: 31120.7 Da    PI: 8.5128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006402.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.77.2e-202065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v+++G ++W++I++ ++ gR++k+c++rw + 
      Aco006402.1 20 KGPWSPEEDELLQRLVQEHGARNWSLISKSIP-GRSGKSCRLRWCNQ 65
                     79******************************.***********985 PP
2Myb_DNA-binding58.41.7e-1874116347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++ +G++ W+tIar +  gRt++ +k++w++ 
      Aco006402.1  74 PFTPEEDETILRAHHHHGNK-WATIARLLS-GRTDNAVKNHWNST 116
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.9281570IPR017930Myb domain
SuperFamilySSF466892.14E-3217113IPR009057Homeodomain-like
SMARTSM007171.2E-171968IPR001005SANT/Myb domain
PfamPF002491.2E-192065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-272173IPR009057Homeodomain-like
CDDcd001674.17E-172264No hitNo description
SMARTSM007172.0E-1571119IPR001005SANT/Myb domain
PROSITE profilePS5129422.09472121IPR017930Myb domain
CDDcd001679.92E-1374117No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2474121IPR009057Homeodomain-like
PfamPF002498.9E-1674116IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAGGTGSRSK EAMMAMDRIK GPWSPEEDEL LQRLVQEHGA RNWSLISKSI PGRSGKSCRL  60
RWCNQLSPQV EHRPFTPEED ETILRAHHHH GNKWATIARL LSGRTDNAVK NHWNSTLKRK  120
LSPSDDRRSA GAGAAAADRD EAAARPLKRA SSVGPVLSSG LCFSPGSPAG SDLSDSSHHS  180
HPAAAQLYRA STAPSASLHP IAAAADDPAT SLTLSLPGSY QGDAAPAPSP APAPPPPSAA  240
AATESPSPSP SPFQFSSEFV SLMQEMIRDE VRSYMLGLEN SGAAAKRIGV AKFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-38171214108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6614581e-113KM661458.1 Ananas bracteatus clone 43635a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102887.10.0transcription factor MYB44-like
SwissprotO231609e-86MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A199UNA41e-127A0A199UNA4_ANACO; Transcription factor MYB44
STRINGXP_008799576.13e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-77myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]