PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006386.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 365aa    MW: 40897.5 Da    PI: 6.0006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006386.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
      Aco006386.1 14 KGLWSPEEDEKLINHIAKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding44.92.7e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
      Aco006386.1  67 RGTFSEQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.627965IPR017930Myb domain
SuperFamilySSF466891.72E-2912108IPR009057Homeodomain-like
SMARTSM007177.1E-141363IPR001005SANT/Myb domain
PfamPF002494.1E-161461IPR001005SANT/Myb domain
CDDcd001673.23E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.65466116IPR017930Myb domain
SMARTSM007174.7E-1366114IPR001005SANT/Myb domain
PfamPF002491.9E-1367111IPR001005SANT/Myb domain
CDDcd001674.64E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIA KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SEQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPETHKPLA DDARGSDDKD KAPNNGETAS GSSELVSPIN TRNSATSNKE FPSYCFSLPQ  180
LRYEPEFDST PRAEASVNPL LWFNPDSRNF DMNSKFSCVG LISASKNQKP LINLPADNSL  240
LVSAVSADIS SSYSCSSGNS IEQQSSSAFF DSGFFAWSDN VAADKAASME LDEELKWSEY  300
LNGSFVNENQ TQSLYDEIRA IEAQFTIDGL GSAYQKNQQP QQHLQTSDIF SKDLQRLPFA  360
FEQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102830.10.0myb-related protein 330-like
TrEMBLA0A199V1A80.0A0A199V1A8_ANACO; Transcription factor MYB86
STRINGGSMUA_Achr8P18730_0011e-117(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-90myb domain protein 55