PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco006191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | GATA | ||||||||
Protein Properties | Length: 241aa MW: 24205.7 Da PI: 8.4877 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.5e-20 | 133 | 167 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Aco006191.1 133 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 167 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.167 | 127 | 163 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.6E-20 | 127 | 178 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-14 | 128 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-17 | 131 | 167 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.98E-12 | 132 | 164 | No hit | No description |
Pfam | PF00320 | 5.4E-18 | 133 | 167 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 133 | 158 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MLHECGRPRS TCGLLGGTCG GGGGATSSSS SSFSISNLFP SYAPPTTSNS TGSSSGGEGE 60 GLSSYVDCTL SLGTPSTRHA GAGPGFGGPG PAQPPSSLQW DVMGRPNKQQ CCGGGGGSGG 120 FSKGNGGDAP RRCANCDTTS TPLWRNGPRG PKSLCNACGI RYKKEERRAA TSSAVPPPPP 180 PPLQQQWGCY GAAAAASKGA VSIAMYGDDG ADSWRLNAAA AAAQAPQFHV RDWPSLFQYN 240 * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020105576.1 | 1e-171 | GATA transcription factor 12-like | ||||
TrEMBL | A0A199VEW3 | 1e-170 | A0A199VEW3_ANACO; GATA transcription factor 19 | ||||
STRING | XP_008800719.1 | 8e-48 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-25 | GATA transcription factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Aco006191.1 |