PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006187.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 165aa    MW: 18701.2 Da    PI: 6.6773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006187.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-1890137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd++l+++++ +G g W+  ar  g++Rt+k+c++rw++yl
      Aco006187.1  90 KGPWTVEEDLILANYIANHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 137
                      79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2283140IPR009057Homeodomain-like
PROSITE profilePS5129420.89185141IPR017930Myb domain
SMARTSM007179.9E-1489139IPR001005SANT/Myb domain
PfamPF002491.6E-1690137IPR001005SANT/Myb domain
SuperFamilySSF466899.84E-2291164IPR009057Homeodomain-like
CDDcd001674.04E-1092137No hitNo description
Gene3DG3DSA:1.10.10.603.1E-8141164IPR009057Homeodomain-like
PROSITE profilePS512948.386142164IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNTSIHNSVG AQNLCLELTK TYDEGEYALT SLYFLYKTHY KPLILLPHPP LSLSLSLSLS  60
LSLSLSLSMG EEGNNMEKRI NSSEETEVRK GPWTVEEDLI LANYIANHGE GVWNNLARSA  120
GLNRTGKSCR LRWLNYLRPD VRRGNITQEE EQLIIELHSR WGNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-148716424100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105491.11e-116myb-related protein 305 isoform X1
SwissprotP813918e-48MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A199UEZ32e-63A0A199UEZ3_ANACO; Myb-related protein 305
STRINGXP_008800726.14e-54(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.11e-41myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]