PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 27768.3 Da PI: 9.1368 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6e-16 | 77 | 168 | 2 | 90 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +k+l +sdv+ +gr+vlpkk ae+h +k + ++ + ++d++ + W++k++y +++s++y+l+ + e+vk++gL+ gD ++ + d++ + Aco005885.1 77 QKELRNSDVGPLGRIVLPKKEAEAHlpTLKARDGISINMYDLETfQLWTFKYRYwpNNRSRMYILE-NAGEYVKSHGLQLGDYIMMYKDDT-KD 168 7999***********************8889999*******5555*********766677777777.****************99995443.33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-23 | 72 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.73E-23 | 74 | 176 | No hit | No description |
SuperFamily | SSF101936 | 2.55E-18 | 75 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2E-11 | 76 | 176 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.037 | 76 | 178 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-12 | 77 | 171 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAGPTKNGAS SSAAAAGSDD LRTAAAAVGG FRAGRKRRSS GRQRRRKPPH ARETALDLNV 60 PALDPDQAVD GLRFILQKEL RNSDVGPLGR IVLPKKEAEA HLPTLKARDG ISINMYDLET 120 FQLWTFKYRY WPNNRSRMYI LENAGEYVKS HGLQLGDYIM MYKDDTKDKF IIRAKKTANK 180 EEAVDSTDDG IFDSIVPDIV VASARYSDLF LPLGDGMSMA YNLSFAFAAD FSMSFPDERA 240 MGNDSINKSD G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 3e-48 | 72 | 188 | 1 | 116 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 3e-48 | 72 | 188 | 1 | 116 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020105605.1 | 1e-156 | B3 domain-containing protein LFL1-like | ||||
Swissprot | A4LBC0 | 1e-54 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | M0SJQ8 | 4e-97 | M0SJQ8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P32440_001 | 7e-98 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8091 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 7e-49 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco005885.1 |
Publications ? help Back to Top | |||
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