PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005872.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 393aa    MW: 43950.7 Da    PI: 7.7607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005872.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09202247454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h + ErrRR+++N +fe Lr  lP+      +K +K ++L  + +Y++ L
  Aco005872.1 202 HHVISERRRREKLNASFEALRMQLPPG-----TKKDKTSVLINTKNYVNTL 247
                  58899********************97.....7999999*****9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-14195265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-9196252No hitNo description
PROSITE profilePS5088813.853198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12202263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7203247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-10204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
METGWYYSSE GSDMDFSQTL SDGYWGSFCS IDNGLTLHCN ENGGANSMNL GADQEQMQLY  60
QAKLITPTPH SSITAMRSHN QNLNPKFPTL ERDGDADDVA IMRAMVVVIS STSSSSSPSS  120
PSVLSNPPSQ DYFPTTQSQR RGNGKIGAFK RYSRSDLTAK SEAEDNCNYG QSMMKRSILM  180
LRRLSSFEGR SRESKSTSNQ LHHVISERRR REKLNASFEA LRMQLPPGTK KDKTSVLINT  240
KNYVNTLRSQ ISELKEKNRR LETCLMITDE GKEASHGLNG RAQVRLIKCS SPTTSELQQI  300
NLTITLRVEC DIIELVLHIL ECLKVIRSIN LISVDAYTYS PQMNLFAKAS IKFGIKDCDW  360
DEALFHEAMT RAVDDVILNT ATPIISELSR LF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERRRRE
2207212RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6611221e-140KM661122.1 Ananas bracteatus clone 41984 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105441.10.0putative transcription factor bHLH041 isoform X2
TrEMBLA0A199VF380.0A0A199VF38_ANACO; Putative transcription factor bHLH041
STRINGXP_008797772.12e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-29bHLH family protein