PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 363aa MW: 41473 Da PI: 6.0416 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.5 | 1.6e-36 | 47 | 138 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk+++++ed++++ ++sws+ nsf+v+d++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F g+k+ll++ik Aco005862.1 47 FLKKTFDMVEDPRTDAVVSWSRARNSFIVWDSHEFASSILPKYFKHNNFSSFVRQLNTYGFRKVDPNR---------WEFANEGFLGGQKHLLKNIK 134 9***************************************************************9998.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ Aco005862.1 135 RRRN 138 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.5E-38 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-57 | 43 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.36E-33 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-32 | 47 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 47 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 86 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEMGRGEVIM VKREKEEGEE EGEGEGEGEV LRPKPMAGLG EAGPAPFLKK TFDMVEDPRT 60 DAVVSWSRAR NSFIVWDSHE FASSILPKYF KHNNFSSFVR QLNTYGFRKV DPNRWEFANE 120 GFLGGQKHLL KNIKRRRNAG LQPDENRLAG PCVELCHFGI KTEESQVKRD RNILMAEVMK 180 LRRQHQNAKA QLIAMEERVK STERKQQQIM AFLAGVLKNP IVAHRLLLHY KHKKQLEDVG 240 KRQRLMANMN PYSDNMKFRE EVRVKSEGES FLSLENSETS CLCSRGEQEE VITESNDYNL 300 DKISEVVWEE LLNVDLTSGS EMVHGDQVEM DLGVDDLGGK PCGWIGDAQN LVQQMDYLDS 360 KH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-27 | 37 | 136 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 37 | 136 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 37 | 136 | 16 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 135 | LKNIKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020105711.1 | 0.0 | heat shock factor protein HSF30-like | ||||
TrEMBL | A0A199VF64 | 0.0 | A0A199VF64_ANACO; Heat shock factor protein HSF30 | ||||
STRING | EOY29928 | 1e-112 | (Theobroma cacao) | ||||
STRING | XP_008775152.1 | 1e-113 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-96 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Aco005862.1 |