PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Nin-like | ||||||||
Protein Properties | Length: 241aa MW: 27467.1 Da PI: 5.7273 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.4 | 2.8e-28 | 120 | 169 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +e+l++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl Aco005835.1 120 SNIGFEELRNYFYMPITKAAKEMNVGLTVLKKRCRELGIPRWPHRKMKSL 169 699*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.769 | 104 | 189 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.2E-23 | 121 | 169 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSTDVFDHAE DNEFVEADAL ALPKIIDQFD DELSQLCSSG IFSYQWYPSQ TIDDVTIDDI 60 DLDSFSWNNQ SLPSNSDGDD PNKEVAVCKV IVPSSSGGAS ISMREERVVR RRATGRSRLS 120 NIGFEELRNY FYMPITKAAK EMNVGLTVLK KRCRELGIPR WPHRKMKSLS SLIHNVQELG 180 KGSPDSEESI QKELEMLELH RQLMEENPDV QLTERTKKLR QACFKANYKK RRALQHPCIL 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020105610.1 | 1e-158 | protein RKD3 | ||||
Swissprot | Q9FGD1 | 1e-41 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A199VEV5 | 1e-152 | A0A199VEV5_ANACO; Protein RKD3 | ||||
STRING | GSMUA_Achr4P08610_001 | 6e-69 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 5e-43 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Aco005835.1 |
Publications ? help Back to Top | |||
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