PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005770.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 412aa    MW: 45024 Da    PI: 4.6329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-07347387954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Aco005770.1 347 ARHRRERISERLRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 387
                  599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-13344396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-10344392No hitNo description
Gene3DG3DSA:4.10.280.101.6E-10346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4348387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDSLGWSNPT PIQHEISTST CIWSTQYDNF SEPKEYYSNI NDDVELHECI YSTGLELQGV  60
RACDTISSSN IEGVCDDQMV GMLAPAPFDS MDGISSLDLL QPQPQEIIKL VADSSVLARS  120
QQATTAWCAD IILSSSDQLL CSSLVPISRP TFVDSQRALL ENLSSGENFQ NLSYSTGNIS  180
SGESENCASF DRNTLNRDEA ASQSSSNPEP PQLEFFNPKA PNPHKRKLEE ECEGILLGEK  240
SHLCSLLRSS SPAMEGGFQI VFGGNSSNSS KGKRSKGEKN SGQSTSNNIE FSQESNYEPD  300
TEAIAQVKEM IYRAAAMRPL NLGAEEAAER PKRKNVRISS DPQTVAARHR RERISERLRV  360
LQRLVPGGSK MDTASMLDEA ANYLKFLKSQ VRALETLGGS KVDGSIINSM Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099046.10.0transcription factor bHLH87-like
RefseqXP_020099047.10.0transcription factor bHLH87-like
RefseqXP_020099048.10.0transcription factor bHLH87-like
RefseqXP_020099049.10.0transcription factor bHLH87-like
RefseqXP_020099050.10.0transcription factor bHLH87-like
RefseqXP_020099051.10.0transcription factor bHLH87-like
RefseqXP_020099052.10.0transcription factor bHLH87-like
RefseqXP_020099053.10.0transcription factor bHLH87-like
TrEMBLA0A199VQ500.0A0A199VQ50_ANACO; Transcription factor bHLH87
STRINGXP_008797919.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.19e-42bHLH family protein