PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005714.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 378aa    MW: 42440.6 Da    PI: 9.7864
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005714.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-1565124155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Aco005714.1  65 SRFRGVSRHRWTGRYEAHLWDkSSWNItqrKKgKQVYLGAYDVEEAAARAYDLAALKYWG 124
                  789******************777755656447*************************98 PP
2AP250.84.1e-16167218155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Aco005714.1 167 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 218
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1265124IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1765134IPR016177DNA-binding domain
PROSITE profilePS5103219.78366132IPR001471AP2/ERF domain
SMARTSM003801.5E-2466138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1566133IPR001471AP2/ERF domain
PRINTSPR003672.6E-56778IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17167228IPR016177DNA-binding domain
CDDcd000182.20E-23167228No hitNo description
PfamPF008471.1E-11167218IPR001471AP2/ERF domain
PROSITE profilePS5103218.676168226IPR001471AP2/ERF domain
SMARTSM003803.4E-26168232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18168227IPR001471AP2/ERF domain
PRINTSPR003672.6E-5208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDAVLVKNEV HSSGRRAHGV AIGPSEGRQV VKCIKRRRRE PTVATDANGE VVERSSPSTT  60
IKRSSRFRGV SRHRWTGRYE AHLWDKSSWN ITQRKKGKQV YLGAYDVEEA AARAYDLAAL  120
KYWGPTTYTN FPVSDYENEL EIMKNATKEE YLASLRRKSS GFSRGVSKYR GVARHHHNGR  180
WEARIGRVFG NKYLYLGTYS TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IKWLKPASST  240
LSVITQEQAS MNQFSISESE IISSNNPFIS DSMVSPYKQE FTLPQFHNNG GFGRRASPTA  300
LSLLLKSSMF RRLVEKNSKA VDEVGVFCEG IKDNAPYGCF SSTVDGPQSI KLQENLSYNY  360
SSEQIIWDGA VSLSSMQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098458.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A199VL070.0A0A199VL07_ANACO; Ethylene-responsive transcription factor WRI1
STRINGXP_008810103.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-88AP2 family protein