PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005686.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 364aa    MW: 42404.4 Da    PI: 4.5541
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005686.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77.4e-14102188286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrerg.ferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  W+++ +laL+ea  ++  + +r++ ++  W+ev++k+++ g +  s  qC+++ + l+k+ykk+k++  +  +  sss++ yf++++
  Aco005686.1 102 WSEESTLALLEAWGDRFVQNERKSIRAEEWSEVARKVAQAGrVPWSESQCRNRVDTLKKKYKKEKARLVDPnARSSSSSWIYFKKMD 188
                  *************************************66551689**********************998845788899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-21101190No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDDTEDDARY PPKPRRAPLS SSSSRSFHRG DEDDEVEPVD RYRKIHREHD DDDDDDDDEE  60
EEGEEEDEDV EDGRDSPDSR GKRRRIDRVR VRPARDPPAT DWSEESTLAL LEAWGDRFVQ  120
NERKSIRAEE WSEVARKVAQ AGRVPWSESQ CRNRVDTLKK KYKKEKARLV DPNARSSSSS  180
WIYFKKMDEL MSPPSPPPPP PPPAPSRQHQ PPPQQQMPQL PIGFGEIYEK MEHSKRQQMA  240
ELERMRKDFQ RELEVQKRQI LERAQAEIAK IREEEGEEDE DTERTEDDDD NDEDGIDASA  300
ENLNSSPFGL HESNVAERAI LLINHIERCH LDSREHQLQM QWEIVYLKCS ERAQKPCVVL  360
CSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098347.13e-81LOW QUALITY PROTEIN: trihelix transcription factor ASIL2
TrEMBLA0A199V7Q32e-96A0A199V7Q3_ANACO; Trihelix transcription factor ASIL2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-16Trihelix family protein